Poster Open Access

3-D-eChem VM: Cheminformatics Research Infrastructure in a Downloadable Virtual Machine

Verhoeven, Stefan; Vass, Marton; de Esch, Iwan; Leurs, Rob; Lusher, Scott; Vriend, Gerrrit; Ritschel, Tina; de Graaf, Chris; McGuire, Ross


JSON Export

{
  "files": [
    {
      "links": {
        "self": "https://zenodo.org/api/files/8e4d8fb4-1a6e-4018-a1d2-c52dfcaa678e/3dechemposter_KSS2016.pdf"
      }, 
      "checksum": "md5:715d196f95bc21f39fcb8a66cbdb1ab8", 
      "bucket": "8e4d8fb4-1a6e-4018-a1d2-c52dfcaa678e", 
      "key": "3dechemposter_KSS2016.pdf", 
      "type": "pdf", 
      "size": 1425750
    }
  ], 
  "owners": [
    20782
  ], 
  "doi": "10.5281/zenodo.47208", 
  "stats": {
    "version_unique_downloads": 123.0, 
    "unique_views": 243.0, 
    "views": 256.0, 
    "version_views": 255.0, 
    "unique_downloads": 122.0, 
    "version_unique_views": 242.0, 
    "volume": 189624750.0, 
    "version_downloads": 134.0, 
    "downloads": 133.0, 
    "version_volume": 191050500.0
  }, 
  "links": {
    "doi": "https://doi.org/10.5281/zenodo.47208", 
    "latest_html": "https://zenodo.org/record/47208", 
    "bucket": "https://zenodo.org/api/files/8e4d8fb4-1a6e-4018-a1d2-c52dfcaa678e", 
    "badge": "https://zenodo.org/badge/doi/10.5281/zenodo.47208.svg", 
    "html": "https://zenodo.org/record/47208", 
    "latest": "https://zenodo.org/api/records/47208"
  }, 
  "created": "2016-03-10T07:14:04+00:00", 
  "updated": "2020-01-20T16:24:19.832596+00:00", 
  "conceptrecid": "630888", 
  "revision": 9, 
  "id": 47208, 
  "metadata": {
    "access_right_category": "success", 
    "doi": "10.5281/zenodo.47208", 
    "description": "<p>3D-e-Chem VM is a freely available Virtual Machine (VM) encompassing tools, databases &amp; workflows, including new resources developed for ligand binding site comparisons and GPCR research. The VM contains a fully functional cheminformatics infrastructure consisting of a chemistry enabled relational database system (PostgreSQL + RDKit) with a data analytics workflow tool (KNIME) and additional cheminformatics capabilities. Tools, workflows and reference data sets are made available. The wide range of cheminformatics functionalities are provided in the downloadable 3D-e-Chem VM allowing immediate use in research and education.</p>", 
    "license": {
      "id": "CC-BY-4.0"
    }, 
    "title": "3-D-eChem VM: Cheminformatics Research Infrastructure in a Downloadable Virtual Machine", 
    "relations": {
      "version": [
        {
          "count": 1, 
          "index": 0, 
          "parent": {
            "pid_type": "recid", 
            "pid_value": "630888"
          }, 
          "is_last": true, 
          "last_child": {
            "pid_type": "recid", 
            "pid_value": "47208"
          }
        }
      ]
    }, 
    "keywords": [
      "Cheminformatics", 
      "KNIME", 
      "GPCR", 
      "KRIPO", 
      " Pharmacophore", 
      " Fingerprints"
    ], 
    "publication_date": "2016-02-24", 
    "creators": [
      {
        "affiliation": "Netherlands eScience Center", 
        "name": "Verhoeven, Stefan"
      }, 
      {
        "affiliation": "Vrije Universiteit Amsterdam", 
        "name": "Vass, Marton"
      }, 
      {
        "affiliation": "Vrije Universiteit Amsterdam", 
        "name": "de Esch, Iwan"
      }, 
      {
        "affiliation": "Vrije Universiteit Amsterdam", 
        "name": "Leurs, Rob"
      }, 
      {
        "affiliation": "Netherlands eScience Center", 
        "name": "Lusher, Scott"
      }, 
      {
        "affiliation": "Radboud University Medical Center, Nijmegen", 
        "name": "Vriend, Gerrrit"
      }, 
      {
        "affiliation": "Radboud University Medical Center, Nijmegen", 
        "name": "Ritschel, Tina"
      }, 
      {
        "affiliation": "Vrije Universiteit Amsterdam", 
        "name": "de Graaf, Chris"
      }, 
      {
        "affiliation": "Radboud University Medical Center, Nijmegen; BioAxis Research BV, Oss", 
        "name": "McGuire, Ross"
      }
    ], 
    "meeting": {
      "url": "https://www.knime.org/summit2016", 
      "dates": "24-25 February 2016", 
      "place": "Berlin, Germany", 
      "title": "KNIME Spring Summit 2016"
    }, 
    "access_right": "open", 
    "resource_type": {
      "type": "poster", 
      "title": "Poster"
    }
  }
}
255
134
views
downloads
All versions This version
Views 255256
Downloads 134133
Data volume 191.1 MB189.6 MB
Unique views 242243
Unique downloads 123122

Share

Cite as