10.5281/zenodo.4710731
https://zenodo.org/records/4710731
oai:zenodo.org:4710731
Alessandro Rigano
Alessandro Rigano
Program in Molecular Medicine, UMass Medical School, Worcester MA 01605, USA
Ulrike Boehm
Ulrike Boehm
0000-0001-7471-2244
Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA
James J. Chambers
James J. Chambers
0000-0003-3883-8215
Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA 01003, USA
Nathalie Gaudreault
Nathalie Gaudreault
0000-0002-9220-5366
Allen Institute for Cell Science, Seattle, WA 98109, USA
Alison J. North
Alison J. North
0000-0002-0577-7949
The Rockefeller University, New York, NY 10065, USA
Jaime A. Pimentel
Jaime A. Pimentel
0000-0001-8569-0466
Instituto de Biotecnologıa, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, 62210, México
Damir Sudar
Damir Sudar
0000-0002-2510-7272
Quantitative Imaging Systems LLC, Portland, OR 97209, USA
Peter Bajcsy
Peter Bajcsy
0000-0002-6968-2615
National Institute of Standards and Technology, Gaithersburg, MD 20899, USA
Claire M. Brown
Claire M. Brown
0000-0003-1622-663X
Advanced BioImaging Facility (ABIF), McGill University, Montreal, Quebec, H3G 0B1, Canada
Alexander D. Corbett
Alexander D. Corbett
0000-0003-1645-5475
Department of Physics and Astronomy, University of Exeter, Exeter, EX4 4QL, UK
Orestis Faklaris
Orestis Faklaris
0000-0001-5965-5405
Biocampus, CNRS UMS 3426, Montpellier 34293, France
Judith Lacoste
Judith Lacoste
MIA Cellavie Inc., Montreal, Quebec, H1K 4G6, Canada
Alex Laude
Alex Laude
0000-0002-3853-1187
Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
Glyn Nelson
Glyn Nelson
0000-0002-1895-4772
Bioimaging Unit, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK
Roland Nitschke
Roland Nitschke
0000-0002-9397-8475
Life Imaging Center and BIOSS Centre for Biological Signaling Studies, Albert-Ludwigs-University Freiburg, Freiburg, 79104, Germany
David Grunwald
David Grunwald
RNA Therapeutics Institute, UMass Medical School, Worcester MA 01605, USA
Caterina Strambio-De-Castillia
Caterina Strambio-De-Castillia
0000-0002-1069-1816
Program in Molecular Medicine, UMass Medical School, Worcester MA 01605, USA
WU-BIMAC/NBOMicroscopyMetadataSpecs: 4DN-BINA-OME (NBO) Microscopy Metadata Specifications
Zenodo
2021
Imaging
microscopy
metadata
quality control
calibration
standards
data-formats
reproducibility
open microscopy
2021-04-22
https://github.com/WU-BIMAC/NBOMicroscopyMetadataSpecs/tree/v02.01
10.5281/zenodo.4671033
v02.01
Other (Open)
Note: v2.01 is a minor release that corrects minor errors that were found in v2.00.
4DN-BINA-OME (NBO) Microscopy Metadata Specifications v2.0 is the result of a proposal put forth by the 4D Nucleome (4DN) Imaging Standards Working Group and by the Bioimaging North America (BINA) Quality Control and Data Management Working Group (QC-DM-WG) for a suite of tiered Microscopy Metadata Specifications that extend the October 2016 version of the OME Data Model schema.
v2.0 supersedes and replaces v1.07 of the guidelines, which were called Microscopy Metadata 4DN Guidelines.
The next version of the NBO Microscopy Metadata Specifications will be released as part of a community outreach effort conducted in collaboration with the Quality Assessment and Reproducibility for Light Microscopy (QUAREP-LiMi) initiative.
Development continues! Everyone is encouraged to contribute to the next release v02-10 draft of the specifications.
Click here for a shortcut to the model directory. To create an issue, click on Issues, the "New Issue" button, and select whether you are submitting a proposed new feature/element or want to propose a change to elements of the current proposal.
Additional support:
-- NSF grant #1917206 to D.G.;
-- Chan Zuckerberg Initiative DAF (Silicon Valley Community Foundation) grant #2019-198155 (5022) awarded to C.S.D.C. as part of the Imaging Scientist Program.
-- Chan Zuckerberg Initiative DAF (Silicon Valley Community Foundation) grant ##2020-225398 awarded to C.M.B. as part of the Imaging Scientist Program.
- Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) grant number Ni 451/9-1 MIAP-Freiburg, to R.N.
National Institutes of Health
10.13039/100000002
5U01CA200059-03
4D Nucleome Network Data Coordination and Integration Center
National Institutes of Health
10.13039/100000002
1U01EB021238-01
Visualizing local and global chromatin architecture, and gene expression in the individual cell by structural (SUSHI) and temporal (3D-SMRT) single molecule imaging