10.5281/zenodo.4671393
https://zenodo.org/records/4671393
oai:zenodo.org:4671393
Harris, Paul David
Paul David
Harris
0000-0002-5307-3217
Department of Biological Chemistry, The Alexander Silberman Institute of Life Sciences, The Edmond J. Safra Campus, The Hebrew University of Jerusalem
Weiss, Shimon
Shimon
Weiss
0000-0002-0720-5426
Department ofChemistry and Biochemistry, University ofCalifornia, Los Angeles
Lerner, Eitan
Eitan
Lerner
0000-0002-3791-5277
Department of Biological Chemistry, The Alexander Silberman Institute of Life Sciences, The Edmond J. Safra Campus, The Hebrew University of Jerusalem
Multi-parameter photon-byphoton hidden Markov modeling dataset
Zenodo
2021
smFRET
H2MM
conformational dynamics
2021-04-08
eng
10.5281/zenodo.4671392
Creative Commons Attribution 4.0 International
The core jupyter notebooks demonstrating mpH2MM using real nsALEX data on DNA hairpin and theRNAP complex with the RPo transcription bubble. Also included are the jupyter notebooks for generating simulated photon trajectories to test the validity of the Integrated complete likelihood (ICL) on data where the ground truth is known.
Included are all HDF5 files used by the jupyter notebooks, as well as .csv files containing all H2MM models generated during the processing of the data.