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PEAKachu: a peak calling tool for CLIP/RIP-seq data

Bischler, Thorsten; Förstner, Konrad U.; Maticzka, Daniel; Wright, Patrick R.

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<oai_dc:dc xmlns:dc="" xmlns:oai_dc="" xmlns:xsi="" xsi:schemaLocation="">
  <dc:creator>Bischler, Thorsten</dc:creator>
  <dc:creator>Förstner, Konrad U.</dc:creator>
  <dc:creator>Maticzka, Daniel</dc:creator>
  <dc:creator>Wright, Patrick R.</dc:creator>
  <dc:description>PEAKachu is a peak calling tool for CLIP/RIP-seq data that can be used to identify targets and interaction sites of RNA-binding proteins. The tool is written in Python 3 and depends on several software packages for Python and R.</dc:description>
  <dc:description>The following dependency package versions have been used for PEAKachu v.0.2.0:
Python: Cython 0.29.13, numpy 1.18.5, scipy 1.3.1, matplotlib 3.3.1, pandas 0.25.1, biopython 1.77, pysam, bcbio-gff 0.6.6, statsmodels 0.10.1, numexpr 2.7.0, rpy2 3.1.0
R: edgeR 3.26.5, DESeq2 1.24.0</dc:description>
  <dc:subject>Peak calling</dc:subject>
  <dc:title>PEAKachu: a peak calling tool for CLIP/RIP-seq data</dc:title>
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