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PEAKachu: a peak calling tool for CLIP/RIP-seq data

Bischler, Thorsten; Förstner, Konrad U.; Maticzka, Daniel; Wright, Patrick R.


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@software{bischler_thorsten_2021_4669966,
  author       = {Bischler, Thorsten and
                  Förstner, Konrad U. and
                  Maticzka, Daniel and
                  Wright, Patrick R.},
  title        = {{PEAKachu: a peak calling tool for CLIP/RIP-seq 
                   data}},
  month        = apr,
  year         = 2021,
  note         = {{The following dependency package versions have 
                   been used for PEAKachu v.0.2.0: Python: Cython
                   0.29.13, numpy 1.18.5, scipy 1.3.1, matplotlib
                   3.3.1, pandas 0.25.1, biopython 1.77, pysam
                   0.16.0.1, bcbio-gff 0.6.6, statsmodels 0.10.1,
                   numexpr 2.7.0, rpy2 3.1.0 R: edgeR 3.26.5, DESeq2
                   1.24.0}},
  publisher    = {Zenodo},
  version      = {v0.2.0},
  doi          = {10.5281/zenodo.4669966},
  url          = {https://doi.org/10.5281/zenodo.4669966}
}
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