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PEAKachu: a peak calling tool for CLIP/RIP-seq data

Bischler, Thorsten; Förstner, Konrad U.; Maticzka, Daniel; Wright, Patrick R.


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.4669966", 
  "title": "PEAKachu: a peak calling tool for CLIP/RIP-seq data", 
  "issued": {
    "date-parts": [
      [
        2021, 
        4, 
        7
      ]
    ]
  }, 
  "abstract": "<p>PEAKachu is a peak calling tool for CLIP/RIP-seq data that can be used to identify targets and interaction sites of RNA-binding proteins. The tool is written in Python 3 and depends on several software packages for Python and R.</p>", 
  "author": [
    {
      "family": "Bischler, Thorsten"
    }, 
    {
      "family": "F\u00f6rstner, Konrad U."
    }, 
    {
      "family": "Maticzka, Daniel"
    }, 
    {
      "family": "Wright, Patrick R."
    }
  ], 
  "note": "The following dependency package versions have been used for PEAKachu v.0.2.0:\nPython: Cython 0.29.13, numpy 1.18.5, scipy 1.3.1, matplotlib 3.3.1, pandas 0.25.1, biopython 1.77, pysam 0.16.0.1, bcbio-gff 0.6.6, statsmodels 0.10.1, numexpr 2.7.0, rpy2 3.1.0\nR: edgeR 3.26.5, DESeq2 1.24.0", 
  "version": "v0.2.0", 
  "type": "article", 
  "id": "4669966"
}
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