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Perl script for evaluating tracr:target interactions with Nupack

Barquist, Lars


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  <identifier identifierType="DOI">10.5281/zenodo.4668694</identifier>
  <creators>
    <creator>
      <creatorName>Barquist, Lars</creatorName>
      <givenName>Lars</givenName>
      <familyName>Barquist</familyName>
      <affiliation>Helmholtz Institute for RNA-based Infection Research</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Perl script for evaluating tracr:target interactions with Nupack</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <dates>
    <date dateType="Issued">2021-04-07</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4668694</alternateIdentifier>
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  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;A Perl script to automate prediction of complex concentrations and interacting base-pairs between a single reference RNA molecule and a fasta file of potential RNA targets using Nupack (tested with version&amp;nbsp;3.2.2).&lt;/p&gt;</description>
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