April 3, 2021 Dataset Open Access

Charles Tapley Hoyt

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  "description": "<p>It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.</p>\n\n<p>We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.</p>\n\n<p>It was generated with the following code in the shell:</p>\n\n<pre>pip install pyobo\npyobo obo xrefs</pre>\n\n<p>More information on this blog post: <a href=\"https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html\">https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html</a>.</p>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "@id": "https://orcid.org/0000-0003-4423-4370", 
      "@type": "Person", 
      "name": "Charles Tapley Hoyt"
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  ], 
  "url": "https://zenodo.org/record/4661382", 
  "datePublished": "2021-04-03", 
  "version": "2021-04-03-1", 
  "keywords": [
    "Cross References", 
    "Ontologies", 
    "Namespaces"
  ], 
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      "@type": "DataDownload"
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  "identifier": "https://doi.org/10.5281/zenodo.4661382", 
  "@id": "https://doi.org/10.5281/zenodo.4661382", 
  "@type": "Dataset", 
  "name": "Inspector Javert's Xref Database"
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