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Dataset Open Access

Inspector Javert's Xref Database

Charles Tapley Hoyt


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.4661382", 
  "language": "eng", 
  "title": "Inspector Javert's Xref Database", 
  "issued": {
    "date-parts": [
      [
        2021, 
        4, 
        3
      ]
    ]
  }, 
  "abstract": "<p>It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.</p>\n\n<p>We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.</p>\n\n<p>It was generated with the following code in the shell:</p>\n\n<pre>pip install pyobo\npyobo obo xrefs</pre>\n\n<p>More information on this blog post: <a href=\"https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html\">https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html</a>.</p>", 
  "author": [
    {
      "family": "Charles Tapley Hoyt"
    }
  ], 
  "version": "2021-04-03-1", 
  "type": "dataset", 
  "id": "4661382"
}
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