There is a newer version of this record available.

Dataset Open Access

Inspector Javert's Xref Database

Charles Tapley Hoyt


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <datafield tag="041" ind1=" " ind2=" ">
    <subfield code="a">eng</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">Cross References</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">Ontologies</subfield>
  </datafield>
  <datafield tag="653" ind1=" " ind2=" ">
    <subfield code="a">Namespaces</subfield>
  </datafield>
  <controlfield tag="005">20211208230613.0</controlfield>
  <controlfield tag="001">4660685</controlfield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">105</subfield>
    <subfield code="z">md5:af33bcd2e464d11474c856f6e4e9db2d</subfield>
    <subfield code="u">https://zenodo.org/record/4660685/files/xrefs_metadata.json</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">370</subfield>
    <subfield code="z">md5:cc8d23596c2ccd3018e403e0c4cbcd02</subfield>
    <subfield code="u">https://zenodo.org/record/4660685/files/xrefs_sample.tsv</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">9709</subfield>
    <subfield code="z">md5:9a04837f189f372e2875d52b9a1866cc</subfield>
    <subfield code="u">https://zenodo.org/record/4660685/files/xrefs_summary_detailed.tsv</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">19900</subfield>
    <subfield code="z">md5:468f71def840b1e2f403248ea826f583</subfield>
    <subfield code="u">https://zenodo.org/record/4660685/files/xrefs_summary_provenance.tsv</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">856</subfield>
    <subfield code="z">md5:59f3a393c6c47123dc929b36eabc8560</subfield>
    <subfield code="u">https://zenodo.org/record/4660685/files/xrefs_summary.tsv</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">384240126</subfield>
    <subfield code="z">md5:b591d5085dd858414fb1a8fe516a2988</subfield>
    <subfield code="u">https://zenodo.org/record/4660685/files/xrefs.tsv.gz</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2021-04-03</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">openaire_data</subfield>
    <subfield code="p">user-bioinformatics</subfield>
    <subfield code="p">user-isb</subfield>
    <subfield code="p">user-linkeddata</subfield>
    <subfield code="o">oai:zenodo.org:4660685</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="0">(orcid)0000-0003-4423-4370</subfield>
    <subfield code="a">Charles Tapley Hoyt</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">Inspector Javert's Xref Database</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-bioinformatics</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-isb</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">user-linkeddata</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.&lt;/p&gt;

&lt;p&gt;We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.&lt;/p&gt;

&lt;p&gt;It was generated with the following code in the shell:&lt;/p&gt;

&lt;pre&gt;pip install pyobo
pyobo obo xrefs&lt;/pre&gt;

&lt;p&gt;More information on this blog post: &lt;a href="https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html"&gt;https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html&lt;/a&gt;.&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.3757265</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.4660685</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">dataset</subfield>
  </datafield>
</record>
245
97
views
downloads
All versions This version
Views 2453
Downloads 976
Data volume 19.6 GB384.3 MB
Unique views 2063
Unique downloads 521

Share

Cite as