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Dataset Open Access

Inspector Javert's Xref Database

Charles Tapley Hoyt

It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.

We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.

It was generated with the following code in the shell:

pip install pyobo
pyobo obo xrefs

More information on this blog post: https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html.

Files (384.3 MB)
Name Size
xrefs.tsv.gz
md5:b591d5085dd858414fb1a8fe516a2988
384.2 MB Download
xrefs_metadata.json
md5:af33bcd2e464d11474c856f6e4e9db2d
105 Bytes Download
xrefs_sample.tsv
md5:cc8d23596c2ccd3018e403e0c4cbcd02
370 Bytes Download
xrefs_summary.tsv
md5:59f3a393c6c47123dc929b36eabc8560
856 Bytes Download
xrefs_summary_detailed.tsv
md5:9a04837f189f372e2875d52b9a1866cc
9.7 kB Download
xrefs_summary_provenance.tsv
md5:468f71def840b1e2f403248ea826f583
19.9 kB Download
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