Dataset Open Access
Inspector Javert's Xref Database
Charles Tapley Hoyt
It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.
We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.
It was generated with the following code in the shell:
pip install pyobo pyobo obo xrefs
More information on this blog post: https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html.
| Name | Size | |
|---|---|---|
|
xrefs.tsv.gz
md5:b591d5085dd858414fb1a8fe516a2988 |
384.2 MB | Download |
|
xrefs_metadata.json
md5:af33bcd2e464d11474c856f6e4e9db2d |
105 Bytes | Download |
|
xrefs_sample.tsv
md5:cc8d23596c2ccd3018e403e0c4cbcd02 |
370 Bytes | Download |
|
xrefs_summary.tsv
md5:59f3a393c6c47123dc929b36eabc8560 |
856 Bytes | Download |
|
xrefs_summary_detailed.tsv
md5:9a04837f189f372e2875d52b9a1866cc |
9.7 kB | Download |
|
xrefs_summary_provenance.tsv
md5:468f71def840b1e2f403248ea826f583 |
19.9 kB | Download |
| All versions | This version | |
|---|---|---|
| Views | 469 | 31 |
| Downloads | 138 | 12 |
| Data volume | 22.1 GB | 768.5 MB |
| Unique views | 416 | 31 |
| Unique downloads | 88 | 7 |
- Publication date:
- April 3, 2021
- DOI:
-
- Keyword(s):
- Cross References Ontologies Namespaces
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International