HMMs of lipase-like and EP domains and code from Lapin et al 2019 (Plant Cell) to perform ANOVA and parametric posthoc test

DOI version of the GitHub repository

https://github.com/ParkerLabMPIPZ/Lapin_Kovacova_Sun_et_al

Subdirectories

1. EP_domain_HMM

pipeline and scripts to derive EP domain HMM

1. high_confidence_OG

pipeline and scripts used to filter OrthoMCL EDS1-family OG and obtain high-confidence sequences

1. R_code_stat_analysis

R code to assess normality of residuals, homogeneity of variance, ANOVA and Tukey's HSD test if the criteria are met (parametric tests) or Nemenyi test if the criterium/a are not met (non-parametric test).