coel-0.8.4.zip
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peterbanda-coel-353d84f
.gitattributes
32 Bytes
.gitignore
68 Bytes
LICENSE
11.3 kB
README.md
5.9 kB
db
DDL
add_constraints.sql
71.8 kB
create_DB.sh
160 Bytes
create_DB.sql
369 Bytes
create_DB_remote.sh
140 Bytes
create_DB_remote.sql
369 Bytes
create_tables.sql
24.0 kB
create_tables_and_constraints.sql
46 Bytes
drop_constraints.sql
23.5 kB
drop_tables.sql
6.7 kB
drop_tables_and_constraints.sql
45 Bytes
DML
TestData
ac_action.sql
161 Bytes
ac_action_series.sql
227 Bytes
ac_action_use_prev_species_mapping.sql
124 Bytes
ac_action_var.sql
478 Bytes
ac_artificial_chemistry.sql
487 Bytes
ac_artificial_chemistry_spec.sql
466 Bytes
ac_cache_write.sql
475 Bytes
ac_compartment.sql
818 Bytes
ac_compartment_channel.sql
426 Bytes
ac_compartment_channel_group.sql
282 Bytes
ac_compartment_channel_group_mapping.sql
409 Bytes
ac_evaluated_action.sql
170 Bytes
ac_evaluated_action_series.sql
199 Bytes
ac_evaluated_performance.sql
644 Bytes
ac_evaluated_run.sql
250 Bytes
ac_evaluated_species_action.sql
357 Bytes
ac_evaluation.sql
280 Bytes
ac_evaluation_item.sql
587 Bytes
ac_multiset.sql
4.6 kB
ac_parameter.sql
391 Bytes
ac_parameter_set.sql
406 Bytes
ac_performance_rate_constant_type_bound_mapping.sql
166 Bytes
ac_range_translation.sql
167 Bytes
ac_rate_constant_type_bound.sql
354 Bytes
ac_reaction.sql
1.4 kB
ac_reaction_group.sql
418 Bytes
ac_reaction_set.sql
853 Bytes
ac_run.sql
214 Bytes
ac_simulation_config.sql
417 Bytes
ac_species.sql
1.0 kB
ac_species_action.sql
481 Bytes
ac_species_history.sql
543 Bytes
ac_species_reaction_association.sql
2.6 kB
ac_species_set.sql
415 Bytes
ac_sub_compartment_association.sql
314 Bytes
ac_task.sql
256 Bytes
ac_translated_run.sql
218 Bytes
ac_translation_item.sql
539 Bytes
ac_translation_item_history.sql
591 Bytes
ac_translation_series.sql
469 Bytes
ac_translation_var.sql
676 Bytes
dyn_multi_analysis_result.sql
141 Bytes
dyn_multi_analysis_spec.sql
467 Bytes
dyn_single_analysis_result.sql
1.7 kB
dyn_single_analysis_spec.sql
825 Bytes
dyn_stats.sql
612 Bytes
dyn_stats_seq.sql
214 Bytes
evo_ac_task.sql
920 Bytes
evo_ac_task_action_series_mapping.sql
145 Bytes
evo_ac_task_rate_constant_type_bound_mapping.sql
304 Bytes
evo_ac_task_reaction_group_mapping.sql
266 Bytes
evo_ac_task_reaction_mapping.sql
242 Bytes
evo_chromosome.sql
347 Bytes
evo_ga_setting.sql
528 Bytes
evo_net_task.sql
616 Bytes
evo_net_task_action_series_mapping.sql
137 Bytes
evo_population.sql
282 Bytes
evo_run.sql
115 Bytes
fun_expression.old.sql
2.9 kB
fun_expression.sql
1.5 kB
fun_function.old.sql
9.8 kB
fun_function.sql
7.4 kB
fun_random_distribution.sql
404 Bytes
fun_transition_table.sql
3.1 kB
net_action.sql
188 Bytes
net_action_series.sql
163 Bytes
net_configuration.sql
853 Bytes
net_edge.sql
3.9 kB
net_function.sql
272 Bytes
net_layer.sql
382 Bytes
net_layer_topology_mapping.sql
305 Bytes
net_network.sql
186 Bytes
net_node_function.sql
3.9 kB
net_run.sql
194 Bytes
net_spatial_neighbor.sql
662 Bytes
net_spatial_neighborhood.sql
136 Bytes
net_spatial_topology.sql
374 Bytes
net_template_topology.sql
1.3 kB
net_topology.sql
868 Bytes
net_type.sql
423 Bytes
net_type_network_mapping.sql
391 Bytes
net_vertex.sql
2.2 kB
net_weight_setting.sql
721 Bytes
recreate_testdata.sql
2.1 kB
task.sql
191 Bytes
task_evo_run.sql
189 Bytes
um_role.sql
324 Bytes
um_user.sql
1.3 kB
um_user_role_mapping.sql
372 Bytes
delete_alldata.sql
2.8 kB
Dump
.ignore
20 Bytes
create_data_dump.sh
116 Bytes
create_full_dump.sh
118 Bytes
restore_data_dump.sh
117 Bytes
restore_full_dump.sh
117 Bytes
create_tables_and_constraints.sh
110 Bytes
delete_alldata.sh
95 Bytes
drop_tables_and_constraints.sh
111 Bytes
rebuild_test_db.sh
393 Bytes
recreate_testdata.sh
107 Bytes
source
Business
.classpath
1.1 kB
.project
796 Bytes
.settings
org.eclipse.core.resources.prefs
117 Bytes
org.eclipse.jdt.core.prefs
5.5 kB
org.eclipse.m2e.core.prefs
86 Bytes
org.eclipse.wst.common.component
315 Bytes
org.eclipse.wst.common.project.facet.core.xml
171 Bytes
org.eclipse.wst.validation.prefs
48 Bytes
org.jboss.ide.eclipse.as.core.prefs
166 Bytes
org.maven.ide.eclipse.prefs
272 Bytes
perceptron_v06.xml
38.3 kB
pom.xml
6.0 kB
src
main
scala
edu
banda
coel
business
BooleanFunctionBO.java
1.4 kB
BooleanNetworkBO.java
9.8 kB
Replicator.java
6.5 kB
SelfOrganizedMapBO.java
19.5 kB
SomNodeBO.java
264 Bytes
chemistry
AcDNAStrandDisplacementConverter.java
24.5 kB
chempic
ChemistryPicGeneratorImpl.java
5.5 kB
dna
DNADomainOrientation.java
217 Bytes
DNADomainType.java
146 Bytes
DNAStrandIllustrator.java
8.0 kB
VisualDsdDNAStrandIllustrator.java
34.4 kB
evo
EvoAcInteractionSeriesTaskBOFactory.java
5.1 kB
EvoAcRateConstantTaskBOFactory.java
2.7 kB
EvoAcSpecTaskBOFactory.java
6.1 kB
EvoNetworkTaskBOFactory.scala
3.1 kB
EvoTaskBOFactory.java
302 Bytes
EvoTaskBOFactorySwitch.java
2.5 kB
fitness
EvoAcFitnessEvaluatorBO.scala
4.2 kB
EvoAcInteractionSeriesFitnessEvaluatorBO.scala
5.2 kB
EvoAcNonlinearityErrorsFitnessEvaluatorBO.scala
1.0 kB
EvoAcRateConstantFitnessEvaluatorBO.scala
1.3 kB
EvoAcSpecFitnessEvaluatorBO.scala
4.6 kB
EvoAcStationaryPointFitnessEvaluatorBO.scala
1.1 kB
EvoAcTurningPointFitnessEvaluatorBO.scala
1.2 kB
EvoTTableNetworkFitnessEvaluator.scala
4.4 kB
netpic
NetworkRunSpatialPicData.java
318 Bytes
NetworkRunSpatialPicGenerator.scala
14.9 kB
nupack
BasePairProbabilityEntry.java
1.4 kB
DistinctBasePairNumberEntry.java
579 Bytes
NupackAdapter.java
9.0 kB
NupackHomeNotSetException.java
158 Bytes
NupackSetting.java
1.1 kB
PfuncResult.java
463 Bytes
PpairsResult.java
1.5 kB
core
client
gui
BN2dPanel.java
1.8 kB
BN2dStateChangePanel.java
1.6 kB
BNFrame.java
37.4 kB
GraphPanel.java
4.2 kB
Som2dPanel.java
2.3 kB
rbn
BNVisualClient.java
844 Bytes
CommandLineClient.java
15.8 kB
InputOutputHandler.java
6.6 kB
MedianClient.java
1.2 kB
domain
BooleanNetworkFactory.java
6.2 kB
som
SelfOrganizedMapFactory.java
3.1 kB
svg
SVGUtil.java
4.4 kB
task
GridTaskSpringEvent.java
586 Bytes
GridTaskState.java
590 Bytes
SimpleMessageEvent.java
381 Bytes
util
ImageUtils.java
5.4 kB
SBMLConverter.java
16.3 kB
test
scala
edu
banda
coel
business
CoelBusinessTest.java
314 Bytes
chempic
dna
DNAStrandIllustratorTest.java
1.9 kB
fsm
CharParserTest.java
2.2 kB
nupack
NupackAdapterTest.java
3.1 kB
core
CoreTestDataGenerator.java
1.9 kB
svg
SVGUtilTest.java
4.2 kB
ConsoleClient
.classpath
1.2 kB
.project
744 Bytes
.settings
org.eclipse.core.resources.prefs
150 Bytes
org.eclipse.jdt.core.prefs
652 Bytes
org.eclipse.m2e.core.prefs
86 Bytes
org.maven.ide.eclipse.prefs
262 Bytes
pom.xml
2.0 kB
src
main
java
edu
banda
coel
consoleclient
CoelConsoleClient.java
18.3 kB
Options.java
9.3 kB
resources
client.properties
43 Bytes
log4j.properties
679 Bytes
remote_service-config.xml
2.5 kB
Domain
.classpath
998 Bytes
.project
732 Bytes
.settings
org.eclipse.core.resources.prefs
115 Bytes
org.eclipse.jdt.core.prefs
422 Bytes
org.eclipse.m2e.core.prefs
86 Bytes
org.eclipse.wst.common.component
247 Bytes
org.eclipse.wst.common.project.facet.core.xml
171 Bytes
org.eclipse.wst.validation.prefs
48 Bytes
org.maven.ide.eclipse.prefs
272 Bytes
pom.xml
1.0 kB
src
main
java
edu
banda
coel
CoelRuntimeException.java
344 Bytes
domain
bn
BooleanNetwork.java
1.0 kB
evo
AcInteractionVariableAssignmentBound.java
1.4 kB
AcSpeciesAssignmentBound.java
1.3 kB
EvoAcInteractionSeriesTask.java
2.9 kB
EvoAcRateConstantTask.java
2.8 kB
EvoAcSpecTask.java
1.4 kB
EvoAcTask.java
2.5 kB
EvoNetworkTask.java
2.5 kB
net
FunctionNode.java
1.3 kB
LayeredNetwork.java
1.4 kB
Network.java
1.7 kB
NetworkConfiguration.java
884 Bytes
NetworkType.java
2.1 kB
Node.java
2.7 kB
SpatialNetwork.java
3.0 kB
rc
RcAcMachineTemplate.java
4.4 kB
RcAcSetting.java
3.9 kB
RcMachineTemplate.java
3.5 kB
RcSetting.java
2.0 kB
service
ArtificialChemistryService.java
5.2 kB
ChemistryPicGenerator.java
837 Bytes
EvolutionService.java
418 Bytes
NetworkService.java
1.6 kB
ReservoirComputingService.java
178 Bytes
TaskManager.java
489 Bytes
UserExistsException.java
227 Bytes
UserManagementService.java
2.0 kB
som
SelfOrganizedMap.java
2.6 kB
SomNode.java
965 Bytes
util
GeneralUtil.java
6.4 kB
task
RcAcRunTask.java
509 Bytes
RcRunTask.java
751 Bytes
RcTaskParts.java
457 Bytes
chemistry
AcCoreEvaluateTask.java
2.1 kB
AcEvaluateTask.java
5.5 kB
AcMultiEvaluateTask.java
2.5 kB
AcMultiRunAnalysisTask.java
3.4 kB
AcPerformanceEvaluateTask.java
5.8 kB
AcPerturbateTask.java
632 Bytes
AcPerturbationPerformanceEvaluateTask.java
939 Bytes
AcRandomRatePerformanceEvaluateTask.java
3.1 kB
AcRunAndTranslateTask.java
2.9 kB
AcRunEventData.java
879 Bytes
AcRunTask.java
6.1 kB
AcRunTranslateAndEvaluateTask.java
549 Bytes
AcRunTranslateAndMultiEvaluateTask.java
555 Bytes
AcTaskParts.java
4.6 kB
AcTranslatedRunEvaluationTask.java
1.4 kB
network
NetworkPerformanceEvaluateTask.java
5.7 kB
NetworkRunAndEvaluateTask.java
2.9 kB
NetworkRunTask.java
2.8 kB
NetworkTaskParts.java
2.3 kB
SpatialNetworkPerformanceEvaluateTask.java
619 Bytes
Parent
.classpath
345 Bytes
.project
735 Bytes
.settings
org.eclipse.core.resources.prefs
55 Bytes
org.eclipse.jdt.core.prefs
209 Bytes
org.eclipse.m2e.core.prefs
86 Bytes
org.maven.ide.eclipse.prefs
272 Bytes
CodeGeneration
hibernate.reveng.xml
467 Bytes
rbnpg-hibernate.cfg.xml
3.3 kB
templates
hbm
column.hbm.ftl
282 Bytes
persistentclass.hbm.ftl
3.8 kB
pojo
Pojo.ftl
535 Bytes
PojoConstructors.ftl
644 Bytes
PojoPropertyAccessors.ftl
717 Bytes
SBML
1-sirius-creativus-noise.xml
702.6 kB
1-sirius-creativus.xml
7.1 kB
1-sirius-reactivus-A.xml
8.2 kB
1-sirius-reactivus-B.xml
7.5 kB
2-sirius-binarius.xml
4.2 kB
3-mizar-erraticus.xml
8.6 kB
4-vega-arcuatus.xml
7.9 kB
5-mitoticus-A.xml
22.7 kB
5-mitoticus-B.xml
10.2 kB
5-mitoticus-C.xml
10.0 kB
5-mitoticus-D.xml
9.6 kB
Brusselator.xml
14.8 kB
Collatz-A.xml
7.4 kB
Collatz-B.xml
7.6 kB
Collatz-C.xml
7.6 kB
Goniometricus.xml
6.4 kB
LotkaVolterra.xml
7.9 kB
OldValuesProof.xml
12.8 kB
Sinus.xml
14.1 kB
SirioTimeSeries.xml
4.0 kB
SirioTimeSeriesOutputLogGain.xml
4.0 kB
dictionary.txt
115 Bytes
pom.xml
2.5 kB
Server
.classpath
1.3 kB
.project
794 Bytes
.settings
org.eclipse.core.resources.prefs
152 Bytes
org.eclipse.jdt.core.prefs
422 Bytes
org.eclipse.m2e.core.prefs
86 Bytes
org.eclipse.wst.common.component
306 Bytes
org.eclipse.wst.common.project.facet.core.xml
230 Bytes
org.eclipse.wst.validation.prefs
4.0 kB
org.hibernate.eclipse.console.prefs
77 Bytes
org.maven.ide.eclipse.prefs
272 Bytes
org.scala-ide.sdt.core.prefs
4.9 kB
org.springframework.ide.eclipse.core.prefs
6.4 kB
.springBeans
570 Bytes
pom.xml
15.9 kB
src
main
resources
ActiveMQ
activemq.xml
5.6 kB
camel.xml
3.0 kB
jetty.xml
6.0 kB
ORM
AcCompartment.hbm.xml
2.6 kB
AcCompartmentAssociation.hbm.xml
1.3 kB
AcCompartmentChannel.hbm.xml
1.8 kB
AcCompartmentChannelGroup.hbm.xml
1.2 kB
AcEvaluatedPerformance.hbm.xml
3.8 kB
AcEvaluation.hbm.xml
1.8 kB
AcInteraction.hbm.xml
2.1 kB
AcInteractionSeries.hbm.xml
3.3 kB
AcInteractionVariable.hbm.xml
1.3 kB
AcInteractionVariableAssignment.hbm.xml
1.4 kB
AcInteractionVariableAssignmentBound.hbm.xml
1.4 kB
AcParameter.hbm.xml
1.6 kB
AcParameterSet.hbm.xml
1.9 kB
AcRateConstantTypeBound.hbm.xml
1.6 kB
AcReaction.hbm.xml
3.7 kB
AcReactionGroup.hbm.xml
1.8 kB
AcReactionSet.hbm.xml
2.0 kB
AcSimulationConfig.hbm.xml
2.6 kB
AcSpecies.hbm.xml
1.5 kB
AcSpeciesAssignmentBound.hbm.xml
1.4 kB
AcSpeciesInteraction.hbm.xml
1.4 kB
AcSpeciesReactionAssociation.hbm.xml
1.9 kB
AcSpeciesSet.hbm.xml
2.0 kB
AcTranslation.hbm.xml
1.5 kB
AcTranslationItem.hbm.xml
1.4 kB
AcTranslationSeries.hbm.xml
2.8 kB
AcTranslationVariable.hbm.xml
1.3 kB
ArtificialChemistry.hbm.xml
2.4 kB
ArtificialChemistrySpec.hbm.xml
6.1 kB
ArtificialChemistrySpecBound.hbm.xml
10.5 kB
Chromosome.hbm.xml
1.8 kB
EvoGaSetting.hbm.xml
4.7 kB
EvoRun.hbm.xml
1.5 kB
EvoTask.hbm.xml
8.4 kB
Function.hbm.xml
1.9 kB
MultiRunAnalysisResult.hbm.xml
6.7 kB
MultiRunAnalysisSpec.hbm.xml
1.8 kB
Network.hbm.xml
1.8 kB
NetworkAction.hbm.xml
1.8 kB
NetworkActionSeries.hbm.xml
1.9 kB
NetworkDamageSpreading.hbm.xml
1.8 kB
NetworkDerridaAnalysis.hbm.xml
1.8 kB
NetworkEvaluation.hbm.xml
2.2 kB
NetworkEvaluationItem.hbm.xml
1.4 kB
NetworkEvaluationVariable.hbm.xml
1.2 kB
NetworkFunction.hbm.xml
2.6 kB
NetworkPerformance.hbm.xml
3.2 kB
NetworkWeightSetting.hbm.xml
2.9 kB
Population.hbm.xml
2.2 kB
RandomDistribution.hbm.xml
3.3 kB
Role.hbm.xml
998 Bytes
SingleRunAnalysisResult.hbm.xml
6.5 kB
SingleRunAnalysisSpec.hbm.xml
2.4 kB
SpatialNeighbor.hbm.xml
1.3 kB
SpatialNeighborhood.hbm.xml
1.5 kB
Stats.hbm.xml
1.3 kB
StatsSequence.hbm.xml
981 Bytes
Task.hbm.xml
2.8 kB
Topology.hbm.xml
5.0 kB
User.hbm.xml
3.4 kB
dao.xml
9.3 kB
grid.xml
5.5 kB
hibernate.cfg.xml
4.4 kB
log4j.properties
762 Bytes
persistence.xml
2.9 kB
remoting.xml
2.6 kB
server.properties
2.0 kB
server.xml
4.0 kB
service.xml
3.4 kB
test-config.xml
692 Bytes
scala
edu
banda
coel
server
NamingStrategy.java
396 Bytes
common
ConfigurableAssignedGenerator.java
2.1 kB
ListAsSQLArrayUserType.java
10.1 kB
MatrixAsSQLArrayUserType.java
9.6 kB
SQLArrayUserType.java
9.2 kB
SecurityUserDO.java
2.0 kB
SqlArray.java
7.3 kB
SqlListArray.java
7.2 kB
SqlMatrix.java
7.2 kB
dao
AcMultiRunAnalysisResultDAO.java
657 Bytes
AcMultiRunAnalysisResultHibernateDAO.java
1.3 kB
ArtificialChemistryDAO.java
410 Bytes
ArtificialChemistryHibernateDAO.java
696 Bytes
SingleRunAnalysisResultDAO.java
527 Bytes
SingleRunAnalysisResultHibernateDAO.java
2.0 kB
TaskDAO.java
303 Bytes
TaskHibernateDAO.java
709 Bytes
grid
callable
EvoFitnessGridEnabledEvaluatorBO.java
4.2 kB
GridAcEvaluateCall.java
1.3 kB
GridChemistryRunAndInterpretCall.scala
2.7 kB
GridChemistryRunCall.scala
2.1 kB
GridDynamicsAnalysisCall.scala
1.4 kB
GridFitnessEvaluationEntry.java
681 Bytes
GridFitnessEvaluatorBOTaskAdapter.java
927 Bytes
GridNetworkBooleanDamageSpreadingAnalysisCall.scala
2.0 kB
GridNetworkBooleanDerridaAnalysisCall.scala
2.0 kB
GridNetworkRunAndEvaluateCall.scala
2.7 kB
GridNetworkRunCall.scala
1.4 kB
GridRerunDerridaAnalysisCall.scala
1.4 kB
service
impl
AbstractService.java
3.4 kB
AcInteractionSeriesIdComparator.java
411 Bytes
ArtificialChemistryServiceAsyncHelper.java
3.8 kB
ArtificialChemistryServiceImpl.java
57.5 kB
EvolutionServiceImpl.java
13.6 kB
GeneticAlgorithmBOAutoSaveDAOHandler.java
4.2 kB
NetworkServiceImpl.scala
19.0 kB
ReservoirComputingServiceImpl.java
3.6 kB
TaskManagerImpl.java
1.8 kB
UserManagementServiceImpl.java
5.1 kB
test
scala
edu
banda
coel
server
BooleanNetworkTSMTest.scala
7.3 kB
CoelTest.java
411 Bytes
dao
CoelBasicDaoTest.java
686 Bytes
RandomDistributionDaoTest.java
1.1 kB
ac
AcCompartmentDaoTest.java
1.6 kB
AcEvaluatedPerformanceDaoTest.java
2.0 kB
AcEvaluationDaoTest.java
1.2 kB
AcInteractionDaoTest.java
1.4 kB
AcInteractionSeriesDaoTest.java
1.3 kB
AcParameterDaoTest.java
1.5 kB
AcParameterSetDaoTest.java
2.0 kB
AcRateConstantTypeBoundDaoTest.java
1.6 kB
AcReactionDaoTest.java
1.9 kB
AcReactionGroupDaoTest.java
1.5 kB
AcReactionSetDaoTest.java
1.2 kB
AcSimulationConfigDaoTest.java
704 Bytes
AcSpeciesDaoTest.java
955 Bytes
AcSpeciesInteractionDaoTest.java
1.5 kB
AcSpeciesReactionAssociationDaoTest.java
1.8 kB
AcSpeciesSetDaoTest.java
1.6 kB
AcTranslationDaoTest.java
1.2 kB
AcTranslationItemDaoTest.java
1.6 kB
AcTranslationSeriesDaoTest.java
1.3 kB
AcTranslationVariableDaoTest.java
1.5 kB
ArtificialChemistryDaoTest.java
2.1 kB
ArtificialChemistrySpecDaoTest.java
1.7 kB
dyn
AcMultiRunAnalysisResultDaoTest.java
2.1 kB
MultiRunAnalysisSpecDaoTest.java
1.6 kB
SingleRunAnalysisResultDaoTest.java
3.6 kB
SingleRunAnalysisSpecDaoTest.java
738 Bytes
StatsSequenceDaoTest.java
1.0 kB
evo
AcInteractionVariableAssignmentBoundDaoTest.java
1.9 kB
AcSpeciesAssignmentBoundDaoTest.java
1.7 kB
ChromosomeDaoTest.java
1.3 kB
EvoGaSettingDaoTest.java
1.0 kB
EvoRunDaoTest.java
953 Bytes
EvoTaskDaoTest.java
1.6 kB
PopulationDaoTest.java
1.1 kB
net
FunctionDaoTest.java
1.2 kB
NetworkDaoTest.java
732 Bytes
NetworkFunctionDaoTest.java
858 Bytes
TopologyDaoTest.java
803 Bytes
task
TaskDaoTest.java
1.0 kB
um
RoleDaoTest.java
572 Bytes
UserDaoTest.java
636 Bytes
scripts
AASP20.java
5.4 kB
AcAsymmetricComparison.java
3.8 kB
AcAsymmetricComparison2.java
4.5 kB
AcAsymmetricComparisons.java
6.0 kB
AcAsymmetricComparisons2.java
6.0 kB
AcAsymmetricComparisons3.java
6.3 kB
AcHierarchicalSpeciesSetMigration.java
6.3 kB
AcNarmaActionSeriesCreation.java
8.1 kB
AcPrevActionMigration.java
5.4 kB
AcRateConstantSettingTest.java
2.8 kB
AcReactionFunctions1014Migration.java
1.4 kB
AcReactionsRetrieve.java
7.4 kB
AcRunBenchmark.java
4.0 kB
AcSpeciesInteractionFunMigration.java
1.7 kB
AcSpeciesReactionAssociationMigration.java
1.4 kB
AcTranslationItemFunMigration.java
1.6 kB
ChemicalReserviorLearningTest.java
12.1 kB
LP100.java
6.8 kB
SP100.java
6.1 kB
service
ArtificialChemistryServiceTest.java
11.8 kB
EvolutionServiceTest.java
5.5 kB
NetworkServiceTest.java
7.2 kB
TaskManagerTest.java
542 Bytes
Web
.classpath
890 Bytes
.project
1.0 kB
.settings
.jsdtscope
443 Bytes
com.springsource.sts.grails.core.prefs
181 Bytes
org.codehaus.groovy.eclipse.preferences.prefs
87 Bytes
org.eclipse.core.resources.prefs
55 Bytes
org.eclipse.jdt.core.prefs
682 Bytes
org.eclipse.jdt.groovy.core.prefs
55 Bytes
org.eclipse.jst.jsp.core.prefs
1.2 kB
org.eclipse.ltk.core.refactoring.prefs
138 Bytes
org.eclipse.m2e.core.prefs
86 Bytes
org.eclipse.wst.common.component
2.0 kB
org.eclipse.wst.common.project.facet.core.xml
215 Bytes
org.eclipse.wst.jsdt.ui.superType.container
49 Bytes
org.eclipse.wst.jsdt.ui.superType.name
6 Bytes
org.eclipse.wst.validation.prefs
960 Bytes
org.grails.ide.eclipse.core.prefs
198 Bytes
org.maven.ide.eclipse.prefs
272 Bytes
application.properties
113 Bytes
grails-app
conf
AppNavigation.groovy
4.7 kB
ApplicationResources.groovy
2.9 kB
BootStrap.groovy
2.1 kB
BuildConfig.groovy
2.6 kB
Config.groovy
12.6 kB
DataSource.groovy
843 Bytes
GrailsMelodyConfig.groovy
1.1 kB
UrlMappings.groovy
1.2 kB
ehcache.xml
705 Bytes
spring
resources.groovy
2.6 kB
controllers
ErrorsController.groovy
411 Bytes
HomeController.groovy
249 Bytes
LoginController.groovy
4.4 kB
LogoutController.groovy
393 Bytes
com
banda
chemistry
domain
AcCompartmentChannelController.groovy
3.5 kB
AcCompartmentChannelGroupController.groovy
3.7 kB
AcCompartmentController.groovy
9.9 kB
AcEvaluatedPerformanceController.groovy
7.8 kB
AcEvaluationController.groovy
3.8 kB
AcInteractionController.groovy
2.6 kB
AcInteractionSeriesController.groovy
9.9 kB
AcInteractionVariableAssignmentController.groovy
5.5 kB
AcInteractionVariableController.groovy
2.8 kB
AcParameterController.groovy
3.8 kB
AcParameterSetController.groovy
948 Bytes
AcPerturbationPerformanceController.groovy
7.4 kB
AcRandomRatePerformanceController.groovy
4.8 kB
AcRateConstantTypeBoundController.groovy
1.8 kB
AcReactionController.groovy
19.6 kB
AcReactionGroupController.groovy
5.9 kB
AcReactionSetController.groovy
20.2 kB
AcRunController.groovy
7.5 kB
AcSimulationConfigController.groovy
2.1 kB
AcSpeciesController.groovy
3.9 kB
AcSpeciesInteractionController.groovy
4.5 kB
AcSpeciesSetController.groovy
3.1 kB
AcTranslationController.groovy
3.5 kB
AcTranslationItemController.groovy
5.6 kB
AcTranslationSeriesController.groovy
3.8 kB
AcTranslationVariableController.groovy
2.9 kB
ArtificialChemistryController.groovy
10.7 kB
ArtificialChemistrySpecBoundController.groovy
2.2 kB
ArtificialChemistrySpecController.groovy
10.5 kB
core
domain
task
TaskController.groovy
1.6 kB
um
RoleController.groovy
1.2 kB
UserController.groovy
5.8 kB
math
domain
StatsController.groovy
134 Bytes
StatsSequenceController.groovy
142 Bytes
dynamics
MultiRunAnalysisResultController.groovy
1.7 kB
MultiRunAnalysisSpecController.groovy
4.0 kB
SingleRunAnalysisResultController.groovy
222 Bytes
SingleRunAnalysisSpecController.groovy
3.7 kB
evo
ChromosomeController.groovy
250 Bytes
EvoGaSettingController.groovy
2.0 kB
EvoRunController.groovy
15.0 kB
EvoTaskController.groovy
17.5 kB
PopulationController.groovy
1.8 kB
network
domain
NetworkActionController.groovy
4.3 kB
NetworkActionSeriesController.groovy
2.2 kB
NetworkController.groovy
2.9 kB
NetworkDamageSpreadingController.groovy
5.0 kB
NetworkDerridaAnalysisController.groovy
5.0 kB
NetworkEvaluationController.groovy
4.4 kB
NetworkEvaluationItemController.groovy
6.0 kB
NetworkEvaluationVariableController.groovy
3.7 kB
NetworkFunctionController.groovy
6.0 kB
NetworkPerformanceController.groovy
4.0 kB
NetworkRunController.groovy
3.7 kB
NetworkWeightSettingController.groovy
2.0 kB
SpatialNeighborController.groovy
3.3 kB
SpatialNeighborhoodController.groovy
1.6 kB
SpatialNetworkPerformanceController.groovy
6.6 kB
TopologyController.groovy
4.8 kB
edu
banda
coel
domain
PostController.groovy
2.1 kB
web
AcController.groovy
972 Bytes
AcRunImageController.groovy
1.8 kB
AdminController.groovy
602 Bytes
AppMessageController.groovy
615 Bytes
AsyncNotificationController.groovy
1.7 kB
BaseController.groovy
809 Bytes
BaseDomainController.groovy
16.7 kB
ChemPicController.groovy
1.2 kB
DownloadController.groovy
3.5 kB
DynController.groovy
114 Bytes
EvoController.groovy
78 Bytes
NetController.groovy
806 Bytes
domain
edu
banda
coel
domain
Post.groovy
646 Bytes
i18n
messages.properties
14.4 kB
messages_da.properties
3.4 kB
messages_de.properties
3.7 kB
messages_es.properties
2.6 kB
messages_fr.properties
2.1 kB
messages_it.properties
1.9 kB
messages_ja.properties
2.0 kB
messages_nl.properties
3.4 kB
messages_pt_BR.properties
2.7 kB
messages_pt_PT.properties
2.8 kB
messages_ru.properties
3.8 kB
messages_th.properties
5.1 kB
messages_zh_CN.properties
2.2 kB
services
edu
banda
coel
web
ChemistryCommonService.groovy
10.9 kB
NetworkCommonService.groovy
1.4 kB
SecureAccessService.groovy
3.0 kB
WebUtilService.groovy
564 Bytes
taglib
edu
banda
coel
web
AsyncCometTagLib.groovy
523 Bytes
RefFieldsTagLib.groovy
3.3 kB
UIExtTagLib.groovy
7.5 kB
org
codehaus
groovy
grails
plugins
jasper
JasperDialogTagLib.groovy
6.2 kB
utils
edu
banda
coel
web
AcAssignmentBoundData.groovy
389 Bytes
AcDependentEvaluationData.groovy
129 Bytes
AcDependentEvoInteractionSeriesTaskData.groovy
169 Bytes
AcDependentEvoRateConstantTaskData.groovy
180 Bytes
AcDependentPerformanceData.groovy
121 Bytes
AcDependentRunData.groovy
144 Bytes
AcDependentTranslationData.groovy
112 Bytes
AcEvaluatedRunData.groovy
111 Bytes
AcRunData.groovy
491 Bytes
AcSimulationData.groovy
125 Bytes
AcTranslatedRunData.groovy
112 Bytes
BinaryStringRepresentations.groovy
184 Bytes
ChartData.groovy
324 Bytes
NetworkRunSpatialImageData.groovy
187 Bytes
SvgStructureData.groovy
89 Bytes
views
_fields
_actionButton.gsp
1.4 kB
_actionLink.gsp
1.4 kB
_modal.gsp
3.5 kB
_module.gsp
598 Bytes
_ref.gsp
190 Bytes
_table.gsp
2.0 kB
_td.gsp
934 Bytes
boolean
_display.gsp
149 Bytes
default
_display.gsp
138 Bytes
user
_display.gsp
178 Bytes
_filterpane
_currentCriteria.gsp
1.4 kB
_filterButton.gsp
320 Bytes
_filterpane.gsp
1.6 kB
_themes
Bootstrap
_footer.gsp
397 Bytes
_header.gsp
577 Bytes
_logo.gsp
270 Bytes
default
_admin-navigation.gsp
900 Bytes
_banner.gsp
594 Bytes
_navigation.gsp
23 Bytes
_pageHeader.gsp
2.3 kB
_pagination.gsp
66 Bytes
_secondary-navigation.gsp
734 Bytes
_user-navigation.gsp
2.2 kB
_ui
Bootstrap
_block.gsp
165 Bytes
_button.gsp
278 Bytes
_carousel.gsp
374 Bytes
_field.gsp
917 Bytes
_form.gsp
357 Bytes
_input.gsp
1.4 kB
_label.gsp
14 Bytes
_logo.gsp
690 Bytes
_message.gsp
253 Bytes
_paginate.gsp
918 Bytes
_slide.gsp
141 Bytes
_tab.gsp
139 Bytes
_tabs.gsp
376 Bytes
ac
_displayJepItem.gsp
100 Bytes
_jep_help.gsp
8.7 kB
_tutorial.gsp
9.4 kB
index.gsp
9.8 kB
acCompartment
_channels.gsp
1.4 kB
_dialogs_list.gsp
562 Bytes
_dialogs_show.gsp
1.0 kB
_parentCompartments.gsp
458 Bytes
_subChannelGroups.gsp
1.5 kB
_subCompartments.gsp
1.9 kB
create.gsp
1.7 kB
edit.gsp
1.8 kB
list.gsp
1.8 kB
show.gsp
1.7 kB
acCompartmentChannel
_displayChannel.gsp
378 Bytes
_displaySourceTargetSpecies.gsp
883 Bytes
create.gsp
2.2 kB
edit.gsp
2.4 kB
show.gsp
1.1 kB
acCompartmentChannelGroup
_channels.gsp
1.0 kB
create.gsp
548 Bytes
edit.gsp
765 Bytes
show.gsp
1.5 kB
acEvaluatedPerformance
create.gsp
3.8 kB
list.gsp
2.2 kB
show.gsp
1.8 kB
showMulti.gsp
1.2 kB
acEvaluation
_displayEvaluationFunction.gsp
148 Bytes
create.gsp
1.0 kB
edit.gsp
1.4 kB
list.gsp
459 Bytes
show.gsp
911 Bytes
acInteraction
_displaySpeciesAction.gsp
356 Bytes
_displayVariableAssignment.gsp
357 Bytes
_speciesActions.gsp
1.3 kB
_variableAssignments.gsp
1.2 kB
create.gsp
971 Bytes
edit.gsp
997 Bytes
show.gsp
1.0 kB
acInteractionSeries
_actions.gsp
3.3 kB
_dialogs_list.gsp
1.8 kB
_dialogs_show.gsp
1.7 kB
_editablePart.gsp
1.4 kB
_subActionSeries.gsp
811 Bytes
_variables.gsp
3.4 kB
create.gsp
357 Bytes
edit.gsp
3.0 kB
list.gsp
1.8 kB
show.gsp
3.9 kB
acInteractionVariable
edit.gsp
798 Bytes
show.gsp
839 Bytes
acInteractionVariableAssignment
_displaySettingFunction.gsp
145 Bytes
create.gsp
1.5 kB
edit.gsp
1.4 kB
show.gsp
987 Bytes
acParameter
_displayEvolFunction.gsp
142 Bytes
create.gsp
801 Bytes
edit.gsp
1.1 kB
show.gsp
950 Bytes
acParameterSet
_parameters.gsp
765 Bytes
edit.gsp
624 Bytes
show.gsp
610 Bytes
acPerturbationPerformance
_dialogs_list.gsp
3.1 kB
create.gsp
3.9 kB
list.gsp
2.0 kB
show.gsp
1.2 kB
acRandomRatePerformance
_dialogs_list.gsp
1.4 kB
create.gsp
4.3 kB
list.gsp
2.0 kB
show.gsp
1.6 kB
acRangeTranslationItem
_displayTranslationFunction.gsp
149 Bytes
_selectTranslationVariable.gsp
174 Bytes
create.gsp
897 Bytes
edit.gsp
1.1 kB
show.gsp
1.0 kB
acRateConstantTypeBound
create.gsp
493 Bytes
edit.gsp
617 Bytes
list.gsp
465 Bytes
show.gsp
609 Bytes
acReaction
_displayCatalysts.gsp
257 Bytes
_displayCatalystsWoLink.gsp
189 Bytes
_displayForwardRateConstants.gsp
144 Bytes
_displayForwardRateFunction.gsp
149 Bytes
_displayImplicitForwardRateFunction.gsp
419 Bytes
_displayImplicitReverseRateFunction.gsp
420 Bytes
_displayInhibitors.gsp
258 Bytes
_displayProducts.gsp
221 Bytes
_displayReactants.gsp
222 Bytes
_displayReaction.gsp
319 Bytes
_displayReverseRateConstants.gsp
147 Bytes
_displayReverseRateFunction.gsp
150 Bytes
_editablePart.gsp
5.8 kB
_structureImage.gsp
208 Bytes
create.gsp
975 Bytes
edit.gsp
959 Bytes
show.gsp
3.9 kB
acReactionGroup
_reactions.gsp
1.2 kB
_reactionsEditable.gsp
1.4 kB
create.gsp
802 Bytes
edit.gsp
1.0 kB
show.gsp
993 Bytes
acReactionSet
_dialogs_list.gsp
984 Bytes
_dialogs_show.gsp
6.8 kB
_extras.gsp
2.5 kB
_reactionGroups.gsp
921 Bytes
_reactionStructureImages.gsp
234 Bytes
_reactions.gsp
3.0 kB
_species.gsp
4.2 kB
create.gsp
1.7 kB
edit.gsp
2.0 kB
list.gsp
2.2 kB
show.gsp
4.5 kB
acRun
_refreshAcDependentPart.gsp
2.3 kB
_refreshAcTask.gsp
174 Bytes
_refreshActionSeries.gsp
176 Bytes
index.gsp
13.0 kB
acSimulationConfig
create.gsp
2.2 kB
edit.gsp
2.4 kB
list.gsp
466 Bytes
show.gsp
2.0 kB
acSpecies
_structureImage.gsp
241 Bytes
edit.gsp
934 Bytes
show.gsp
959 Bytes
acSpeciesInteraction
_displaySettingFunction.gsp
145 Bytes
_selectSpecies.gsp
187 Bytes
create.gsp
1.5 kB
edit.gsp
1.4 kB
show.gsp
984 Bytes
acSpeciesSet
_species.gsp
2.9 kB
create.gsp
487 Bytes
edit.gsp
1.0 kB
list.gsp
453 Bytes
show.gsp
995 Bytes
acTranslation