Published October 26, 2009 | Version v1
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Three new species of deep-sea Gromia (Protista, Rhizaria) from the bathyal and abyssal Weddell Sea, Antarctica

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Rothe, Nina, Gooday, Andrew J., Cedhagen, Tomas, Fahrni, José, Hughes, J. Alan, Page, Anton, Pearce, Richard B., Pawlowski, Jan (2009): Three new species of deep-sea Gromia (Protista, Rhizaria) from the bathyal and abyssal Weddell Sea, Antarctica. Zoological Journal of the Linnean Society 157 (3): 451-469, DOI: 10.1111/j.1096-3642.2009.00540.x, URL: https://academic.oup.com/zoolinnean/article-lookup/doi/10.1111/j.1096-3642.2009.00540.x

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References

  • Adl SM, Simpson AGB, Farmer MA, Anderson RA, Anderson OR, Barta JR, Bowser SS, Brugerolle G, Fensome RA, Fredericq S, James TY, Karpov S, Kugrens P, Krug J, Lane CE, Lewis LA, Lodge J, Lynn DH, Mann DG, McCourt RM, Mendoza L, Moestrup O, Mozley-Standrisge SE, Nerad TA, Shearer CA, Smirnov AV, Spiegel FW, Taylor MFJR. 2005. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. Journal of Eukaryotic Microbiology 52: 399-451.
  • Aranda da Silva A. 2005. Benthic protozoan community attributes in relation to environmental gradients in the Arabian Sea. Thesis for the degree of Doctor of Philosophy, University of Southampton 75-120.
  • Aranda da Silva A, Gooday AJ. 2009. Large organic-walled Protista (Gromia) in the Arabian Sea: density, diversity, distribution and ecology. Deep-Sea Research II, in press.
  • Aranda da Silva A, Pawlowski J, Gooday AJ. 2006. High diversity of deep-sea Gromia from the Arabian Sea revealed by small subunit rDNA sequence analysis. Marine Biology 148: 769-777.
  • Arnold ZM. 1951. Occurrence of Gromia oviformis Dujardin in California (Testacea). Journal of Biology 9: 351-353.
  • Arnold ZM. 1972. Observations on the biology of the protozoan Gromia oviformis Dujardin. University of California Publications in Zoology 100: 1-168.
  • Bass D, Chao EE, Nikolaev S, Yabuki A, Ishida K, Berney C, Pakzad U, Wylezich C, Cavalier-Smith T. 2008. Phylogeny of naked filose and reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea revised. Protist, in press.
  • Berney C, Pawlowski J. 2003. Revised small subunit rDNA analysis provides further evidence that Foraminifera are related to Cercozoa. Journal of Molecular Evolution 57: 120-127.
  • Bovee EC. 1985. Class Filosea Leidy, 1879. In: Lee JJ, Hutner SH, Bovee EC, eds. An illustrated guide to the protozoa. Lawrence, KS: Society of Protozoologists, 228- 245.
  • Bowser SS, Marko M, Bernhard JM. 1996. Occurrence of Gromia oviformis in McMurdo Sound. Antarctic Journal of the United States 31: 122-124.
  • Brandt A, De Broyer C, De Mesel I, Ellingson KE, Gooday AJ, Hilbig B, Linse K, Thomson MRA, Tyler PA. 2007. The biodiversity of the deep Southern Ocean benthos. Philosophical Transactions of the Royal Society B 362: 39-66.
  • Brey T, Dahm C, Gorny M, Klages M, Stiller M, Arntz WE. 1996. Do Antarctic benthic invertebrates show an extended level of eurybathy? Antarctic Science 8: 3-6.
  • Burki F, Berney C, Pawlowski J. 2002. Phylogenetic position of Gromia oviformis Dujardin inferred from nuclear-encoded Small Subunit Ribosomal DNA. Protist 153: 251-260.
  • Cavalier-Smith T. 1998. A revised six-kingdom system of life. Biological Reviews of the Cambridge Philosophical Society (London) 73: 203-266.
  • Cavalier-Smith T. 2002. The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa. International Journal of Systematic and Evolutionary Microbiology 52: 297-354.
  • Cavalier-Smith T, Chao EEY. 2003. Phylogeny and classification of phylum Cercozoa (Protozoa). Protist 154: 341- 358.
  • Cedhagen T. 1996. Foraminiferans as food for Cephalaspideans (Gastropoda: Ophistobranchia), with notes on secondary tests around calcareous foraminiferans. Phuket Marine Biological Center Special Publication 16: 279-290.
  • Diaz RJ. 2004. Biological and physical processes structuring the deep-sea surface sediments in the Scotia and Weddell Seas, Antarctica. Deep-Sea Research II 51: 1515-1532.
  • Dujardin F. 1835. Recherches sur les organisms inferieurs. Annales des Sciences Naturelles 2: 345-351.
  • Fahrbach E. 2006. The expedition ANTARKTIS-XXII/3 of the Research Vessel 'Polarstern' in 2005. Berichte zur Polar-und Meeresforschung 533: 1-246.
  • Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17: 368-376.
  • Galtier N, Gouy M, Gautier C. 1996. SEAVIEW and PHYLO_WIN, two graphic tools for sequence alignment and molecular phylogeny. Computer Applications in the Biosciences 12: 543-548.
  • Gooday AJ. 2002. Organic-walled allogromiids: aspects of their occurrence, diversity and ecology in marine habitats. Journal of Foraminiferal Research 32: 384-399.
  • Gooday AJ, Bowser SS. 2005. The second Gromia species (testate amoeba) from the deep sea: its natural history and association with the Pakistan margin oxygen minimum zone. Protist 156: 113-126.
  • Gooday AJ, Bowser SS, Bernhard JM. 1996. Benthic foraminiferal assemblages in Explorers Cove, Antarctica: a shallow water site with deep-sea characteristics. Progress in Oceanography 37: 117-166.
  • Gooday AJ, Bowser SS, Bett BJ, Smith CR. 2000. A large testate protist, Gromia sphaerica sp nov (Order Filosea), from the bathyal Arabian Sea. Deep-Sea Research II 47: 55-73.
  • Gooday AJ, Bowser SS, Cedhagen T, Cornelius N, Hald M, Korsun S, Pawlowski J. 2005. Monothalamous foraminiferans and gromiids (Protista) from western Svalbard: A preliminary survey. Marine Biology Research 1: 290-312.
  • Gooday AJ, Cedhagen T, Cornelius N. 2006. Diversity and biogeography of deep-sea benthic foraminifera - a combined molecular and morphological approach. In: Fahrbach E, ed. The expedition ANTARKTIS-XXII/3 of the Research vessel 'Polarstern' in 2005. Berichte zur Polar-und Meeresforschung 533: 88-93.
  • Gooday AJ, Hughes JA, Levin L. 2001. The foraminiferan macrofauna from three North Carolina (USA) slope sites with contrasting carbon flux: a comparison with the metazoan macrofauna. Deep-Sea Research I 48: 1709-1739.
  • Gross O. 2002. Sediment interactions of foraminifera: implications for food degradation and bioturbation processes. Journal of Foraminiferal Research 32: 414-424.
  • Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
  • Hedley RH. 1958. Confusion between Gromia oviformis and Allogromia ovoidea. Nature 15: 1391-1392.
  • Hedley RH, Bertaud WS. 1962. Electron-Microscopic Observations of Gromia oviformis (Sarcodina). Journal of Protozoology 91: 79-97.
  • Hedley RH, Wakefield JSJ. 1969. Fine structure of Gromia oviformis (Rhizopodea: Protozoa). Bulletin of the British Museum (Natural History) Zoology 18: 69-89.
  • Heinz P, Geslin E, Hemleben C. 2005. Laboratory observations of benthic foraminiferal cysts. Marine Biology Research 1: 149-159.
  • Howe JA. 2006. Recent sedimentation and geochemistry across the Northern Weddell Sea and adjacent deep-water regions, Antarctica. In: Fahrbach E, ed. The expedition ANTARKTIS-XXII/3 of the Research vessel 'Polarstern' in 2005. Berichte zur Polar-und Meeresforschung 533: 196- 206.
  • Howe JA, Shimmield TM, Diaz R. 2004. Deep-water sedimentary environments of the northwestern Weddell Sea and South Sandwich Islands, Antarctica. Deep-Sea Research II 51: 1489-1514.
  • Jepps MW. 1926. Contribution to the study of Gromia oviformis Dujardin. Quarternary Journal of Microscopical Science 70: 701-719.
  • Jepps MW. 1942. Studies on Polystomella Lamarck (Foraminifera). Journal of the Marine Biological Association of the United Kingdom 25: 607-666.
  • Keeling PJ. 2001. Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Molecular Biology and Evolution 18: 1551-1557.
  • Levine ND, Corliss JO, Cox FEG, Deroux G, Grain J, Honigberg BM, Leedale GF, Loeblich AR, Lom J III, Lynn D, Meinfeld EG, Page FC, Poljansky G, Sprague V, Vavra J, Wallace FG. 1980. A newly revised classification of the Protozoa. Journal of Protozoology 27: 37-58.
  • Linke P, Lutze GF. 1993. Microhabitat preferences of benthic foraminifera - a static concept or a dynamic adaptation to optimize food acquisition? Marine Micropaleontology 20: 215-234.
  • Longet D, Burki F, Flakowski J, Berney C, Polet S, Fahrni J, Pawlowski J. 2004. Multigene evidence for close evolutionary relations between Gromia and Foraminifera. Acta Protozoologica 43: 303-311.
  • Nikolaev SI, Berney C, Fahrni JF, Bolivar I, Polet S, Mylnikov AP, Aleshin VV, Petrov NB, Pawlowski J. 2004. The twilight of Heliozoa and rise of Rhizaria, an emerging Supergroup of amoeboid eukaryotes. Proceedings of the National Academy of Sciences of the United States 101: 8066-8071.
  • Norman AM. 1892. Museum Normanium pt 7-8. Durham, England.
  • Ogden CG, Hedley RH. 1980. An atlas of freshwater testate amoebae. London: Oxford University Press, British Museum (Natural History).
  • Patterson DJ, Simpson A, Rogerson A. 2000. Amoebae of uncertain affinities. In: Lee JJ, Leedale GF, Bradbury P, eds. An illustrated guide to the Protozoa. Lawrence, KS: Allen Press Inc, 804-827.
  • Pawlowski J. 2008. The twilight of Sarcodina: a molecular perspective on the polyphyletic origin of amoeboid protists. Protistology 5: 281-302.
  • Pawlowski J, Bolivar I, Guiard J, Gouy M. 1994. Phylogenetic position of Foraminifera inferred from LSU rDNA gene sequences. Molecular Biology and Evolution 11: 929- 938.
  • Pawlowski J, Bowser SS, Gooday AJ. 2007. A note on the genetic similarity between shallow- and deep-water Epistominella vitrea (Foraminifera) in the Antarctic. Deep-Sea Research II 54: 1720-1726.
  • Pawlowski J, Fahrni JF, Guiard J, Konlan K, Hardecker J, Habura A, Bowser SS. 2005. Allogromiid foraminifera and gromiids from under the Ross Ice Shelf: morphological and molecular diversity. Polar Biology 28: 514-522.
  • Rhumbler L. 1904. Systematische Zusammenstellung der recenten Reticulosa (Nuda und Foraminifera). Archiv fur Protistenkunde 3: 181-294.
  • Schulze MS. 1875. Gromia sp. Jahresbericht der Comm. zur wissenschaft. Unters. der deutschen Meere in Kiel 1872- 1873.
  • Tekle YI, Grant J, Cole JC, Nerad TA, Anderson OR, Patterson DJ, Katz LA. 2007. A multigene analysis of Corallomyxa tenera sp. nov. suggests its membership in a clade that includes Gromia, Haplosporidia and Foraminifera. Protist 158: 457-472.
  • Tyler PA, Young CM, Clarke A. 2000. Temperature and pressure tolerances of embryos and larvae of the Antarctic sea urchin Sterechinus neumayeri (Echinodermata: Echinoidea): potential for deep-sea invasion from high latitudes. Marine Ecological Progress Series 192: 173- 180.