Dataset Open Access

Local Z Projector example dataset and parameters 02

Léo Valon; Jean-Yves Tinevez

Drosophila pupa notum, captured with a laser-scanning confocal microscope (LSM 880, Zeiss). Pixel size 0.188 µm, z step 1 µm.

This dataset  also contains the parameters to generate the reference surface and local projection. It is meant to be used with the Fiji plugin called 'LocalZProjector': https://gitlab.pasteur.fr/iah-public/localzprojector. The two *.localzprojector files can be loaded directly in the plugin to load adequate parameters.

See the accompanying paper: DProj: A toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images.

https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2

 

Files (2.5 GB)
Name Size
2018_03_08_cad_cic_LSM-HM.tif
md5:3949e6409ffe15622efccffc4e14230e
52.7 MB Download
2018_03_08_cad_cic_LSM-LZP.tif
md5:52aecc931fa4b56f0fb9164567546539
105.4 MB Download
2018_03_08_cad_cic_LSM-params-screenshot.png
md5:85b79929775c22e9a1e4ec959f56402f
46.7 kB Download
2018_03_08_cad_cic_LSM.heightmap.lzp.json
md5:754696f491e1349008de6d01585da22b
159 Bytes Download
2018_03_08_cad_cic_LSM.localproj.lzp.json
md5:93ced6bcced56482a306ae74c5d6d65f
149 Bytes Download
2018_03_08_cad_cic_LSM.tif
md5:8cd3ad66289ce2afa4ce898b9ef18a0a
2.3 GB Download
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