Dataset Open Access

Local Z Projector example dataset and parameters 01

Léo Valon; Jean-Yves Tinevez


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    <subfield code="a">&lt;p&gt;Drosophila pupa notum, captured with a laser-scanning confocal&amp;nbsp;microscope (LSM 880, Zeiss). Pixel size 0.188 &amp;micro;m, z step 1 &amp;micro;m.&lt;/p&gt;

&lt;p&gt;This dataset&amp;nbsp; also contains the parameters to generate the reference surface and local projection, also included. It is meant to be used with the Fiji plugin called &amp;#39;LocalZProjector&amp;#39;:&amp;nbsp;&lt;a href="https://gitlab.pasteur.fr/iah-public/localzprojector"&gt;https://gitlab.pasteur.fr/iah-public/localzprojector&lt;/a&gt;. The two &lt;em&gt;*.localzprojector &lt;/em&gt;files can be loaded directly in the plugin to load adequate parameters.&lt;/p&gt;

&lt;p&gt;See the accompanying paper:&amp;nbsp;&lt;em&gt;DProj: A toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images.&lt;/em&gt;&lt;/p&gt;

&lt;p&gt;&lt;a href="https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2"&gt;https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;This is&amp;nbsp;&lt;em&gt;a downsampled version of&amp;nbsp;&lt;/em&gt;the dataset used to generate the figures 1, 2 and 3 in this paper, as well as the comparison in table 1.&lt;/p&gt;

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