Software Open Access

Adaptation at different points along antibiotic concentration gradients

Lagator, Mato; Uecker, Hildegard; Neve, Paul

Antibiotic concentrations vary dramatically in the body and the environment. Hence, understanding the dynamics of resistance evolution along antibiotic concentration gradients is critical for predicting and slowing the emergence and spread of resistance. While it has been shown that increasing the concentration of an antibiotic slows resistance evolution, how adaptation to one antibiotic concentration correlates with fitness at other points along the gradient has not received much attention. Here, we selected populations of Escherichia coli at several points along a concentration gradient for three different antibiotics, asking how rapidly resistance evolved and whether populations became specialized to the antibiotic concentration they were selected on. Populations selected at higher concentrations evolved resistance more slowly but exhibited equal or higher fitness across the whole gradient. Populations selected at lower concentrations evolved resistance rapidly, but overall fitness in the presence of antibiotics was lower. However, these populations readily adapted to higher concentrations upon subsequent selection. Our results indicate that resistance management strategies must account not only for the rates of resistance evolution but also for the fitness of evolved strains.

Funding provided by: Wellcome Trust
Crossref Funder Registry ID: http://dx.doi.org/10.13039/100010269
Award Number: 216779/Z/19/Z

Files (7.4 MB)
Name Size
analysis_lag.R
md5:6630b18506e6b635f4f7d846d13259cf
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anova_area.R
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anova_area.txt
md5:ddac60617118ab2b210abc40b15eb3d3
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anova_growth_rates.R
md5:98cd0fbda4d7cf5503cbaab6f002011a
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anova_lag.txt
md5:03b46412ac7993e8aebb63808a01820c
685 Bytes Download
anova_lag_phase.R
md5:47aa02ccf3be76d6dffc4d83fc5d1e6e
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anova_max.R
md5:6f380274cce7074a109568cf85b1fd6e
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anova_max.txt
md5:bfa6b86622345f77cf253421176bce16
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anova_rates.txt
md5:f68dc8b7503a9909dc7756f2eeabb204
675 Bytes Download
area_and_max_analysis.R
md5:9c5c5c32e9fd3a660f9613f9f9fc0e9e
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Data_sorted_and_arranged.xlsx
md5:56b1da0ee4e91b8afe0dfd8d779233b6
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distribution_2MICevolved.eps
md5:46b4c92b862752e250805fec88641f66
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evol_grad.R
md5:b0a889dd08c919126e960fbca74f8d5a
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fit.log
md5:05d422c6f4624dde684a02f199f077b9
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growth_curves_grad.eps
md5:e0af08f31c76cde976da87e9c83671fe
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growth_curves_nitro-eps-converted-to.pdf
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growth_curves_nitro.eps
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growth_curves_strep-eps-converted-to.pdf
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growth_curves_strep.eps
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growth_curves_tet-eps-converted-to.pdf
md5:11d7f40d6e9d82d3fdbcdd2023544d64
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growth_curves_tet.eps
md5:2095fc73205f4ca9d6317e06d4dd22b3
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growth_rate_analysis.R
md5:f5e3aa8b70071f7b42dc2541efb88d21
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individual_rates_nitro2MIC.txt
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individual_rates_nitroEC50.txt
md5:deb02fa92638740df19aed11c9a977b7
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individual_rates_nitroLB.txt
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individual_rates_nitroMIC.txt
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individual_rates_strep2MIC.txt
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individual_rates_strepEC50.txt
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individual_rates_strepLB.txt
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individual_rates_strepMIC.txt
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individual_rates_tet2MIC.txt
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individual_rates_tetEC50.txt
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individual_rates_tetLB.txt
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individual_rates_tetMIC.txt
md5:acd3ddd1d59b3878cb43f9b926020e72
1.2 kB Download
lag_phase_analysis.R
md5:822d18cc429c2386d7d7290f0bc0aab0
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mean_area.eps
md5:bdd222fbe9b5ba2a07494f3597ee8517
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mean_area_nitro2MIC.txt
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mean_area_nitro_2MIC_grad.txt
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mean_area_nitroEC50.txt
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mean_area_nitroLB.txt
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mean_area_nitroMIC.txt
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mean_area_strep2MIC.txt
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mean_area_strep_2MIC_grad.txt
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mean_area_strepEC50.txt
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mean_area_strepLB.txt
md5:e6c9cfc91ca373d9767e57a226caa007
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mean_area_strepMIC.txt
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mean_area_tet2MIC.txt
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mean_area_tet_2MIC_grad.txt
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mean_area_tetEC50.txt
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mean_area_tetLB.txt
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mean_area_tetMIC.txt
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684 Bytes Download
mean_differences_nitro.eps
md5:d4fdc8bbc53bc55f17c2a90291c94271
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mean_differences_strep.eps
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mean_differences_tet.eps
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mean_lag.eps
md5:0366982b9cd1772f09913a29b7b6625d
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mean_lag_nitro2MIC.txt
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mean_lag_nitro_2MIC_grad.txt
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mean_lag_nitroEC50.txt
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mean_lag_nitroLB.txt
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mean_lag_nitroMIC.txt
md5:83d4a53e38efbf10bc211aa371e201c2
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mean_lag_strep2MIC.txt
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mean_lag_strep_2MIC_grad.txt
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mean_lag_strepEC50.txt
md5:c3addd8315faab8e9359e251d923c1de
701 Bytes Download
mean_lag_strepLB.txt
md5:712e5ca2019e61d3c4d2ab8fa33a0fcf
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mean_lag_strepMIC.txt
md5:9085227c71a13196ecacfe8c951a5ebe
646 Bytes Download
mean_lag_tet2MIC.txt
md5:2dc55e03deaaadedc11340ba2069d9e7
678 Bytes Download
mean_lag_tet_2MIC_grad.txt
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mean_lag_tetEC50.txt
md5:358c69827825ae195c5494be16b48579
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mean_lag_tetLB.txt
md5:8233d8bfa9f582fac29ce906be4daac1
732 Bytes Download
mean_lag_tetMIC.txt
md5:56b369b6b26878581e841eb8c8b13d6b
669 Bytes Download
mean_max.eps
md5:423648f6e807adb8beb4598fdb0b0829
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mean_max_nitro2MIC.txt
md5:0ceb994eda044835e2272fe6a164fce6
710 Bytes Download
mean_max_nitro_2MIC_grad.txt
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mean_max_nitroEC50.txt
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mean_max_nitroLB.txt
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mean_max_nitroMIC.txt
md5:76773abc1e419cfa78ecd27116dad818
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mean_max_strep2MIC.txt
md5:7748e2bf1f8e90040261eaa0ea1038f5
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mean_max_strep_2MIC_grad.txt
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mean_max_strepEC50.txt
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mean_max_strepLB.txt
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713 Bytes Download
mean_max_strepMIC.txt
md5:1e35c3df89f1a8fd90e9039e29c1addb
691 Bytes Download
mean_max_tet2MIC.txt
md5:e79351f2be7abed8e40f3e8a7747ad51
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mean_max_tet_2MIC_grad.txt
md5:cb4c38f6b288d159d8c32b29fbad2e59
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mean_max_tetEC50.txt
md5:4fa42fe6bb60d8ca27f4cbb480a4884b
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mean_max_tetLB.txt
md5:ec66f067007fbca2c5d62feeb03eb666
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mean_max_tetMIC.txt
md5:3633d45e8d0a2b3fe29e8e608f1231e5
732 Bytes Download
mean_rates.eps
md5:a05740748e331109f8273f4d2488c460
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mean_rates_nitro.eps
md5:df764263a2a4fa20a02ba14cb6f673ca
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mean_rates_nitro2MIC.txt
md5:91b85fd9815c83ea58dd4cec2d2595b3
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mean_rates_nitro_2MIC_grad.txt
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497 Bytes Download
mean_rates_nitroEC50.txt
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775 Bytes Download
mean_rates_nitroLB.txt
md5:b90e3ad300363d606c32691d5e546f15
777 Bytes Download
mean_rates_nitroMIC.txt
md5:6b56bd9359c490f3e274d605d054b0ec
739 Bytes Download
mean_rates_strep.eps
md5:82f56641efd27719381affc13e343057
24.4 kB Download
mean_rates_strep2MIC.txt
md5:14cdc759787c1d3c8dbb596286788ebd
672 Bytes Download
mean_rates_strep_2MIC_grad.txt
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502 Bytes Download
mean_rates_strepEC50.txt
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777 Bytes Download
mean_rates_strepLB.txt
md5:565a660f1023f6be6e6812815d1e91f8
777 Bytes Download
mean_rates_strepMIC.txt
md5:e597dbd1e092c3084c1a9ea7b5456bdf
737 Bytes Download
mean_rates_tet.eps
md5:3b096612dd1ecbd9bddbe369b54b925e
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mean_rates_tet2MIC.txt
md5:bb75731c9125f155f1be9f776f19dd56
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mean_rates_tet_2MIC_grad.txt
md5:c3b76d5835c68ff0b81e2f0b69a3d4fa
499 Bytes Download
mean_rates_tetEC50.txt
md5:8697dc5650b784513891c071700d9c02
777 Bytes Download
mean_rates_tetLB.txt
md5:dccd6b36f7df57c2d0d9edb32148fabc
778 Bytes Download
mean_rates_tetMIC.txt
md5:6b7f0690edc707eaa2e6d02cb48ac5ea
734 Bytes Download
nitro2MIC.txt
md5:db28a3e4375a91a561711302ca9ff299
22.0 kB Download
nitro_2MIC_grad.txt
md5:f2a957824ce95a928aa65541e7ff4e85
10.3 kB Download
nitroEC50.txt
md5:58e51b81d0d96d671edab42f8c485bd7
23.2 kB Download
nitroLB.txt
md5:32b1bfa9c10ae78704254b7c7483ea1f
23.2 kB Download
nitroMIC.txt
md5:b7bf9a38426bc5d741755bc925053d0c
22.0 kB Download
permutation_rates.R
md5:20e6a90f93c00b48a1380eabbb655ee7
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permutation_rates.txt
md5:d7aa721184636cef49c98acd1d21757c
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plot_area.txt
md5:cf133c15ddbf985ff07bc0cd8adfee21
503 Bytes Download
plot_area_nitro.txt
md5:2fab4bce78f6f00bcfc3433e36f43512
492 Bytes Download
plot_area_strep.txt
md5:84f69a5cc92aebdaeaf04afa88740f37
509 Bytes Download
plot_area_tet.txt
md5:4ff3347386b9b80621fe60414121b773
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plot_differences.txt
md5:f2ba76c9f7ab9089feb3aa96d6dace97
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plot_differences_area.txt
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plot_differences_max.txt
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plot_distribution_rates.R
md5:06e474fbe627f875ba5e76fa94c37a97
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plot_lag.txt
md5:959f937ea6af10fa5ff706dc5f88f0db
770 Bytes Download
plot_lag_nitro.txt
md5:b70f1a2eb1ba1b2134f426fca28bbf02
561 Bytes Download
plot_lag_strep.txt
md5:8d856fc066d931e0ff6d2d44036733ca
542 Bytes Download
plot_lag_tet.txt
md5:8051a43c3c03a49161f4245ce0640510
573 Bytes Download
plot_max.txt
md5:ed14d0b3fc07cee41b3537c81d941946
460 Bytes Download
plot_max_nitro.txt
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540 Bytes Download
plot_max_strep.txt
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516 Bytes Download
plot_max_tet.txt
md5:e9fcba3d5568821f5f98af1c34b714e0
518 Bytes Download
plot_mean_area_max.R
md5:fcca3aa66211b340388ff29edbcb0db1
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plot_mean_lag.R
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plot_mean_rates.R
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plot_nitro.R
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plot_rates.txt
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plot_rates_distribution_nitro2MIC.txt
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plot_rates_distribution_nitro_2MIC_grad.txt
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plot_rates_distribution_nitroEC50.txt
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756 Bytes Download
plot_rates_distribution_nitroLB.txt
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758 Bytes Download
plot_rates_distribution_nitroMIC.txt
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729 Bytes Download
plot_rates_distribution_strep2MIC.txt
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662 Bytes Download
plot_rates_distribution_strep_2MIC_grad.txt
md5:6f4907974d7b71c5ae4247fba3936e7b
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plot_rates_distribution_strepEC50.txt
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758 Bytes Download
plot_rates_distribution_strepLB.txt
md5:6c386794bb1d0e220419885dd2d0a573
758 Bytes Download
plot_rates_distribution_strepMIC.txt
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727 Bytes Download
plot_rates_distribution_tet2MIC.txt
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plot_rates_distribution_tet_2MIC_grad.txt
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plot_rates_distribution_tetEC50.txt
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plot_rates_distribution_tetLB.txt
md5:3cdc0ca314fd34af816d4e126e7df6a0
759 Bytes Download
plot_rates_distribution_tetMIC.txt
md5:e347383e82d5ea8f3afa1511dc9e00b5
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plot_rates_nitro.txt
md5:005b28048c9fdf15aaff35b9acfbc6af
536 Bytes Download
plot_rates_strep.txt
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plot_rates_tet.txt
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545 Bytes Download
plot_strep.R
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plot_tet.R
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5.3 kB Download
plotfile_area_means.gnu
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plotfile_distribution_rates.gnu
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3.2 kB Download
plotfile_lag_means.gnu
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plotfile_max_means.gnu
md5:b03659f87214304ae1912e8ffc8cf6cb
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plotfile_means_area.gnu
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3.0 kB Download
plotfile_means_lag.gnu
md5:ae2541356c52e5bac63ef18ae4a40c8b
3.0 kB Download
plotfile_means_max.gnu
md5:4aac4712bf002bb5c3ec81dd5daa9c5e
3.0 kB Download
plotfile_means_rates.gnu
md5:b770ddf8efc8405ce971df101704c2b7
5.3 kB Download
plotfile_rate_differences.gnu
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2.2 kB Download
plotfile_rates_distribution_nitro.gnu
md5:dff4ec4e247a9907f1b619a055be4aea
5.9 kB Download
plotfile_rates_distribution_strep.gnu
md5:b3244d783c6c1675e01f5bc2d17d0599
5.9 kB Download
plotfile_rates_distribution_tet.gnu
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5.9 kB Download
plotfile_rates_means.gnu
md5:925194d2f2832e4044afecf7e56fb212
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rates_distribution_nitro.eps
md5:24cf313f492ca34eeb14b7c1139b6239
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rates_distribution_strep.eps
md5:77a82ccc1ff2987581e70bd058a2247d
42.4 kB Download
rates_distribution_tet.eps
md5:6d53849bd4d6f3c2d0f03c26860e9eeb
42.6 kB Download
README
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strep2MIC.txt
md5:b963da4d475f3b9d888ee08dfc7715cf
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strep_2MIC_grad.txt
md5:c67642af7ef0ac73597df27acd586571
10.3 kB Download
strepEC50.txt
md5:fa71bebbad196830290ac7eb0efdfa9e
23.1 kB Download
strepLB.txt
md5:83fbbb1bdb9ded00dd8ff57f54d51fb1
23.2 kB Download
strepMIC.txt
md5:cb36502c76f08d36ee549eab3dc959d0
21.9 kB Download
summary_area_max.R
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329 Bytes Download
summary_lag.R
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300 Bytes Download
summary_rates.R
md5:2097bf3f5103bd1aa9c07e4b681e01be
375 Bytes Download
tet2MIC.txt
md5:831775c787c6ad1cfc0952db8bc32e3b
22.1 kB Download
tet_2MIC_grad.txt
md5:f4e1d2c5a93b478c22db3d6b3efbc437
10.2 kB Download
tetEC50.txt
md5:2adbf205378f48aa6a6d5614ccfc197f
23.2 kB Download
tetLB.txt
md5:62ca1d98f013d35a45b372c64b10962a
23.2 kB Download
tetMIC.txt
md5:6fe41c5cf5ec00d3ca318df0bf18f89b
22.1 kB Download
ttest_area.R
md5:1f848a4a31d8eaa3b8598c1109e50163
1.2 kB Download
ttest_area.txt
md5:932a3d6c08404e02a1d1875dea7b586f
7.1 kB Download
ttest_area_differences.R
md5:d47e8a9a338f96011c25ebbf8093c64a
3.7 kB Download
ttest_area_differences.txt
md5:0003536fffae2c87c73799c47a47f982
190 Bytes Download
ttest_area_differences_scaled.txt
md5:b0e75bac66777830cab461b0675781fa
190 Bytes Download
ttest_costs_area.txt
md5:05d9df108ed3ad311912665437b692e7
2.6 kB Download
ttest_costs_area_max.R
md5:ae39c5d773b7a704ad3b56bc5ad17559
2.0 kB Download
ttest_costs_lag.R
md5:3ae2e640aa041436e71aaad21f706e58
1.0 kB Download
ttest_costs_lag.txt
md5:3d952c458a0c19ca5a87a67f53d42f02
2.6 kB Download
ttest_costs_max.txt
md5:f4e21949e24deaba6bc348b078c1ca06
2.6 kB Download
ttest_costs_rates.txt
md5:076158fd784d9876f59be6cdb3e00659
2.6 kB Download
ttest_growth_rate_differences.R
md5:bee42e02d3bf6cdfa971551fb5806b93
3.7 kB Download
ttest_growth_rates.R
md5:2b388ecf458e7bda53aafe2477a87708
1.2 kB Download
ttest_lag.R
md5:8895f0b7a92729f7397bfa93aedd6b5c
1.1 kB Download
ttest_lag.txt
md5:fbc4d1c2fe9f0b6a18bea8ddba70a3f6
3.2 kB Download
ttest_lag_differences.R
md5:83dc9cdd8326d6657cd16506c7f65b91
3.7 kB Download
ttest_lag_differences.txt
md5:bc0d21e78012a522c2d3ad5275df67df
191 Bytes Download
ttest_lag_differences_scaled.txt
md5:a6d1468cdcc0056ceb71e0c7e8ae6e88
190 Bytes Download
ttest_max.R
md5:08f980342284d631a9fbcf7ffa4f1974
1.1 kB Download
ttest_max.txt
md5:d992055a525ae54dbd1fd68c78388e32
2.5 kB Download
ttest_max_differences.R
md5:03669cc0245535c8b218121237048512
3.6 kB Download
ttest_max_differences.txt
md5:0374c1c65eab99bb3ea94cca0f5568f7
188 Bytes Download
ttest_max_differences_scaled.txt
md5:e539e2bd660d3817e2103cdcddd28ddc
187 Bytes Download
ttest_rate_differences.txt
md5:99f1c76edf3f7b8f429bce2ac3e7e1a4
188 Bytes Download
ttest_rate_differences_scaled.txt
md5:83037397f79beb865f9b89a55881d2d8
187 Bytes Download
ttest_rates.txt
md5:eefd3b169f1e46be83ef774b0451bb6f
1.8 kB Download
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