4603363
doi
10.5281/zenodo.4603363
oai:zenodo.org:4603363
user-isb
user-linkeddata
user-bioinformatics
Inspector Javert's Xref Database
Charles Tapley Hoyt
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
Cross References
Ontologies
Namespaces
<p>It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.</p>
<p>We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.</p>
<p>It was generated with the following code in the shell:</p>
<pre>pip install pyobo
pyobo obo xrefs</pre>
<p>More information on this blog post: <a href="https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html">https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html</a>.</p>
Zenodo
2021-03-13
info:eu-repo/semantics/other
3757265
user-isb
user-linkeddata
user-bioinformatics
2021-03-13
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https://zenodo.org/records/4603363/files/xrefs.tsv.gz
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https://zenodo.org/records/4603363/files/xrefs_summary.tsv
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https://zenodo.org/records/4603363/files/xrefs_sample.tsv
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isVersionOf
doi