Dataset Open Access
Inspector Javert's Xref Database
Charles Tapley Hoyt
It would have been really useful for Inspector Javert to find Jean Valjean if he had the cross-references between the identifies of all of the people he met in Montreuil-sur-Mer to the prisoner database (all he needed was 24601!). Since this dataset has a long name, you can feel free to abbreviate it as IJXD.
We have the same problem in bioinformatics, so this is a database of cross-references extracted from OBO Foundry and other sources by PyOBO. It is a gzipped five-column TSV file that has source namespace, source identifier, target namespace, target identifier, and provenance. Each has been normalized so cross-references from different sources can be integrated and traversed.
It was generated with the following code in the shell:
pip install pyobo pyobo obo xrefs
More information on this blog post: https://cthoyt.com/2020/04/19/inspector-javerts-xref-database.html.
| Name | Size | |
|---|---|---|
|
xrefs.tsv.gz
md5:e3d65876effab02efc95d0270cb2b342 |
529.7 MB | Download |
|
xrefs_sample.tsv
md5:c38d73bc2a7a7a80afd4c12634992b9f |
200 Bytes | Download |
|
xrefs_summary.tsv
md5:293ae310e697c8f8b67a84a8d74f8c6e |
9.2 kB | Download |
|
xrefs_summary_provenance.tsv
md5:3b7160823d0ed548feb5478f02c83a5c |
19.8 kB | Download |
| All versions | This version | |
|---|---|---|
| Views | 469 | 37 |
| Downloads | 138 | 9 |
| Data volume | 22.1 GB | 1.1 GB |
| Unique views | 416 | 37 |
| Unique downloads | 88 | 6 |
- Publication date:
- March 12, 2021
- DOI:
-
- Keyword(s):
- Cross References Ontologies Namespaces
- Communities:
- License (for files):
- Creative Commons Attribution 4.0 International