March 11, 2021 Presentation Open Access

Pratik Jagtap; Susan T. Weintraub; Darryl Davis; Antony Harvey; Michael Hoopmann; Lukas Käll; Samuel H. Payne; Yasset Perez-Riverol; Magnus Palmblad

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{
  "description": "<p>Metaproteomics &ndash; the characterization of proteins expressed by microbiomes &ndash; presents a range of technical challenges, from sampling to data processing and interpretation. In the&nbsp;iPRG&nbsp;2020 study, we investigated the status of metaproteomics data analysis workflows by posing questions to the metaproteomics studies in two studies. In two phases of the study, the participants were asked to deduce the organisms or taxa in a metaproteomics sample (&ldquo;What species are represented in the sample?&rdquo;) and what biological phenomena have taken place (&ldquo;What interactions took place between the species in the mixture?&rdquo;). The outputs from these studies will be presented at the RG session at ABRF 2021.</p>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "University of Minnesota", 
      "@id": "https://orcid.org/0000-0003-0984-0973", 
      "@type": "Person", 
      "name": "Pratik Jagtap"
    }, 
    {
      "affiliation": "University of Texas Health Science Center at San Antonio", 
      "@id": "https://orcid.org/0000-0002-8328-7814", 
      "@type": "Person", 
      "name": "Susan T. Weintraub"
    }, 
    {
      "affiliation": "Janssen Pharmaceuticals, Horsham, PA", 
      "@type": "Person", 
      "name": "Darryl Davis"
    }, 
    {
      "affiliation": "Thermo Fisher Scientific, Austin, TX", 
      "@id": "https://orcid.org/0000-0002-5246-0434", 
      "@type": "Person", 
      "name": "Antony Harvey"
    }, 
    {
      "affiliation": "Institute for Systems Biology, Seattle, WA", 
      "@id": "https://orcid.org/0000-0001-7029-7792", 
      "@type": "Person", 
      "name": "Michael Hoopmann"
    }, 
    {
      "affiliation": "Royal Institute of Technology, Stockholm, Sweden", 
      "@id": "https://orcid.org/0000-0001-5689-9797", 
      "@type": "Person", 
      "name": "Lukas K\u00e4ll"
    }, 
    {
      "affiliation": "Brigham Young University, Provo, UT", 
      "@id": "https://orcid.org/0000-0002-8351-1994", 
      "@type": "Person", 
      "name": "Samuel H. Payne"
    }, 
    {
      "affiliation": "European Bioinformatics Institute, Hinxton, UK", 
      "@id": "https://orcid.org/0000-0001-6579-6941", 
      "@type": "Person", 
      "name": "Yasset Perez-Riverol"
    }, 
    {
      "affiliation": "Leiden University Medical Center, The Netherlands", 
      "@id": "https://orcid.org/0000-0002-5865-8994", 
      "@type": "Person", 
      "name": "Magnus Palmblad"
    }
  ], 
  "url": "https://zenodo.org/record/4599626", 
  "datePublished": "2021-03-11", 
  "@type": "PresentationDigitalDocument", 
  "keywords": [
    "Bioinformatics", 
    "Metaproteomics", 
    "Microbiome"
  ], 
  "@context": "https://schema.org/", 
  "identifier": "https://doi.org/10.5281/zenodo.4599626", 
  "@id": "https://doi.org/10.5281/zenodo.4599626", 
  "workFeatured": {
    "url": "https://abrf.org", 
    "alternateName": "ABRF", 
    "location": "Virtual", 
    "@type": "Event", 
    "name": "Association of Biomolecular Resource Facilities"
  }, 
  "name": "iPRG-2020: Proteome Informatics Research Group Study on Metaproteomics"
}