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iPRG-2020: Proteome Informatics Research Group Study on Metaproteomics

Pratik Jagtap; Susan T. Weintraub; Darryl Davis; Antony Harvey; Michael Hoopmann; Lukas Käll; Samuel H. Payne; Yasset Perez-Riverol; Magnus Palmblad


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  <identifier identifierType="DOI">10.5281/zenodo.4599626</identifier>
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    <creator>
      <creatorName>Pratik Jagtap</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-0984-0973</nameIdentifier>
      <affiliation>University of Minnesota</affiliation>
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    <creator>
      <creatorName>Susan T. Weintraub</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-8328-7814</nameIdentifier>
      <affiliation>University of Texas Health Science Center at San Antonio</affiliation>
    </creator>
    <creator>
      <creatorName>Darryl Davis</creatorName>
      <affiliation>Janssen Pharmaceuticals, Horsham, PA</affiliation>
    </creator>
    <creator>
      <creatorName>Antony Harvey</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-5246-0434</nameIdentifier>
      <affiliation>Thermo Fisher Scientific, Austin, TX</affiliation>
    </creator>
    <creator>
      <creatorName>Michael Hoopmann</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-7029-7792</nameIdentifier>
      <affiliation>Institute for Systems Biology, Seattle, WA</affiliation>
    </creator>
    <creator>
      <creatorName>Lukas Käll</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-5689-9797</nameIdentifier>
      <affiliation>Royal Institute of Technology, Stockholm, Sweden</affiliation>
    </creator>
    <creator>
      <creatorName>Samuel H. Payne</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-8351-1994</nameIdentifier>
      <affiliation>Brigham Young University, Provo, UT</affiliation>
    </creator>
    <creator>
      <creatorName>Yasset Perez-Riverol</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-6579-6941</nameIdentifier>
      <affiliation>European Bioinformatics Institute, Hinxton, UK</affiliation>
    </creator>
    <creator>
      <creatorName>Magnus Palmblad</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-5865-8994</nameIdentifier>
      <affiliation>Leiden University Medical Center, The Netherlands</affiliation>
    </creator>
  </creators>
  <titles>
    <title>iPRG-2020: Proteome Informatics Research Group Study on Metaproteomics</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <subjects>
    <subject>Bioinformatics</subject>
    <subject>Metaproteomics</subject>
    <subject>Microbiome</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2021-03-11</date>
  </dates>
  <resourceType resourceTypeGeneral="Text">Presentation</resourceType>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4599626</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.4599625</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Metaproteomics &amp;ndash; the characterization of proteins expressed by microbiomes &amp;ndash; presents a range of technical challenges, from sampling to data processing and interpretation. In the&amp;nbsp;iPRG&amp;nbsp;2020 study, we investigated the status of metaproteomics data analysis workflows by posing questions to the metaproteomics studies in two studies. In two phases of the study, the participants were asked to deduce the organisms or taxa in a metaproteomics sample (&amp;ldquo;What species are represented in the sample?&amp;rdquo;) and what biological phenomena have taken place (&amp;ldquo;What interactions took place between the species in the mixture?&amp;rdquo;). The outputs from these studies will be presented at the RG session at ABRF 2021.&lt;/p&gt;</description>
    <description descriptionType="Other">Research Group Presentation at the 2021 Virtual Association of Biomolecular Resource Facilities (ABRF) Annual Meeting.</description>
  </descriptions>
</resource>
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