Dataset Open Access

Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Data

Pappas, Nikolaos; Dutilh, E. Bas

Dublin Core Export

<?xml version='1.0' encoding='utf-8'?>
<oai_dc:dc xmlns:dc="" xmlns:oai_dc="" xmlns:xsi="" xsi:schemaLocation="">
  <dc:creator>Pappas, Nikolaos</dc:creator>
  <dc:creator>Dutilh, E. Bas</dc:creator>
  <dc:description>Raw data required to reproduce all intermediate results and thereby the final predictions.

These are used in the accompanying snakemake pipeline

This archive is automatically downloaded and files are extracted when executing the pipeline.

You can also download and extract the files manually.

Included files are:

	data/genomes/phages_refseq.fasta : A multifasta file with all phage genomes available on RefSeq , on 14/01/2020
	data/interactions/interactions.txt: A PSI-MI TAB file containing all interactions from IntAct, retrieved on 28/05/2019
	data/pvogs/all.hmm : All hmmer profiles for pVOGs, retrieved from on 13/01/2020
	data/pvogs/VOGProteinTable.txt: pVOGs occurrence on genomes used in the pVOGs paper, along with their annotation, retrieved on 16/01/2020
	data/taxonomy_db/taxa.sqlite.db: Taxonomy db created with ete3 toolkit with data retrieved on 16/05/2019
	data/taxonomy_db/taxa.traverse.pkl: Created automatically with ete3.
	data/md5sums.txt: md5sums for all files
  <dc:title>Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Data</dc:title>
All versions This version
Views 5858
Downloads 1212
Data volume 8.1 GB8.1 GB
Unique views 4949
Unique downloads 1111


Cite as