Dataset Open Access

Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Data

Pappas, Nikolaos; Dutilh, E. Bas


JSON-LD (schema.org) Export

{
  "inLanguage": {
    "alternateName": "eng", 
    "@type": "Language", 
    "name": "English"
  }, 
  "description": "<p>Raw data required to reproduce all intermediate results and thereby the final predictions.</p>\n\n<p>These are used in the accompanying snakemake pipeline https://git.science.uu.nl/papanikos/pvogs_function.</p>\n\n<p>This archive is automatically downloaded and files are extracted when executing the pipeline.</p>\n\n<p>You can also download and extract the files manually.</p>\n\n<p>Included files are:</p>\n\n<ul>\n\t<li>data/genomes/phages_refseq.fasta : A multifasta file with all phage genomes available on RefSeq , on 14/01/2020</li>\n\t<li>data/interactions/interactions.txt: A PSI-MI TAB file containing all interactions from IntAct, retrieved on 28/05/2019</li>\n\t<li>data/pvogs/all.hmm : All hmmer profiles for pVOGs, retrieved from http://dmk-brain.ecn.uiowa.edu/pVOGs/downloads on 13/01/2020</li>\n\t<li>data/pvogs/VOGProteinTable.txt: pVOGs occurrence on genomes used in the pVOGs paper, along with their annotation, retrieved on 16/01/2020</li>\n\t<li>data/taxonomy_db/taxa.sqlite.db: Taxonomy db created with ete3 toolkit with data retrieved on 16/05/2019</li>\n\t<li>data/taxonomy_db/taxa.traverse.pkl: Created automatically with ete3.</li>\n\t<li>data/md5sums.txt: md5sums for all files</li>\n</ul>", 
  "license": "https://creativecommons.org/licenses/by/4.0/legalcode", 
  "creator": [
    {
      "affiliation": "Utrecht University", 
      "@id": "https://orcid.org/0000-0002-8540-4324", 
      "@type": "Person", 
      "name": "Pappas, Nikolaos"
    }, 
    {
      "affiliation": "Utrecht University", 
      "@id": "https://orcid.org/0000-0003-2329-7890", 
      "@type": "Person", 
      "name": "Dutilh, E. Bas"
    }
  ], 
  "url": "https://zenodo.org/record/4576599", 
  "datePublished": "2021-03-03", 
  "@context": "https://schema.org/", 
  "distribution": [
    {
      "contentUrl": "https://zenodo.org/api/files/4832cd13-4dda-4b9f-ad0a-1e8e43afc7be/pvogs_function.data.tar.gz", 
      "encodingFormat": "gz", 
      "@type": "DataDownload"
    }
  ], 
  "identifier": "https://doi.org/10.5281/zenodo.4576599", 
  "@id": "https://doi.org/10.5281/zenodo.4576599", 
  "@type": "Dataset", 
  "name": "Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Data"
}
58
12
views
downloads
All versions This version
Views 5858
Downloads 1212
Data volume 8.1 GB8.1 GB
Unique views 4949
Unique downloads 1111

Share

Cite as