Dataset Open Access

Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Data

Pappas, Nikolaos; Dutilh, E. Bas


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{
  "publisher": "Zenodo", 
  "DOI": "10.5281/zenodo.4576599", 
  "language": "eng", 
  "title": "Functional Association of Prokaryotic Virus Orthologous Groups: A Proof of Concept - Data", 
  "issued": {
    "date-parts": [
      [
        2021, 
        3, 
        3
      ]
    ]
  }, 
  "abstract": "<p>Raw data required to reproduce all intermediate results and thereby the final predictions.</p>\n\n<p>These are used in the accompanying snakemake pipeline https://git.science.uu.nl/papanikos/pvogs_function.</p>\n\n<p>This archive is automatically downloaded and files are extracted when executing the pipeline.</p>\n\n<p>You can also download and extract the files manually.</p>\n\n<p>Included files are:</p>\n\n<ul>\n\t<li>data/genomes/phages_refseq.fasta : A multifasta file with all phage genomes available on RefSeq , on 14/01/2020</li>\n\t<li>data/interactions/interactions.txt: A PSI-MI TAB file containing all interactions from IntAct, retrieved on 28/05/2019</li>\n\t<li>data/pvogs/all.hmm : All hmmer profiles for pVOGs, retrieved from http://dmk-brain.ecn.uiowa.edu/pVOGs/downloads on 13/01/2020</li>\n\t<li>data/pvogs/VOGProteinTable.txt: pVOGs occurrence on genomes used in the pVOGs paper, along with their annotation, retrieved on 16/01/2020</li>\n\t<li>data/taxonomy_db/taxa.sqlite.db: Taxonomy db created with ete3 toolkit with data retrieved on 16/05/2019</li>\n\t<li>data/taxonomy_db/taxa.traverse.pkl: Created automatically with ete3.</li>\n\t<li>data/md5sums.txt: md5sums for all files</li>\n</ul>", 
  "author": [
    {
      "family": "Pappas, Nikolaos"
    }, 
    {
      "family": "Dutilh, E. Bas"
    }
  ], 
  "type": "dataset", 
  "id": "4576599"
}
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