GMOD/Apollo: 2.6.3 Official Release
Creators
- Nathan Dunn1
- Colin Diesh
- Deepak2
- S2KFan
- Gregg Helt3
- Robert Buels
- Monica Munoz-Torres4
- Yating Liu
- Helena
- Anthony Bretaudeau5
- Stephen Ficklin
- Justin Reese1
- luke6
- hsiao yi
- Robert Syme
- Cory Maughmer7
- NehaVC
- childers
- Michael Paulini8
- Tim Stickland9
- Aymeric Naômé
- Kim Rutherford10
- Liam Gretton
- Mikkel Christensen11
- Rasmus Olofzon12
- The Gitter Badger13
- Eric Y14
- Jun-Wei Lin
- rbelnap
- wesleyemason
- 1. Lawrence Berkeley National Lab
- 2. LBNL
- 3. Genomancer
- 4. TISLab, OSU
- 5. BIPAA/GenOuest
- 6. OHSU Computational Biology Department
- 7. @TAMU-CPT
- 8. WormBase
- 9. Wellcome Sanger Institute
- 10. Uni of Cambridge / @PomBase
- 11. EBI
- 12. Lund University, Biomedical Centre
- 13. Gitter
- 14. UCB
Description
Official Release
2.6.3
Features
- Fix empty attribute list in annotation panel 2552.
- Added ability to use posts to sequence methods 2555.
- Added system info web service 2557.
- Add "merged from" comment to merged in transcript and gene 2567.
- Added support for "obsolete", and partials in the interface for GFF3s 2573.
- Allow overlap filter to be configurable 2582.
Bug Fixes:
- Bad coordinate value in genomic element details screen in annotator panel 2559.
- Web services indicated user had no organism permissions when checking the login 2554.
- Vcf reads as ISO-8859-1 instead of UTF-8 from reader mangling some symbols. 2498.
- Added security fixes for web services. 2564, 2587.
- In some cases web services tries to create a preference which results in incorrect results 2580.
- For the track service, the overlap filter is too restrictive when converting NCList to JSON 2586.
Infrastructure Changes
- Removed travis in favor of GitHub Actions 2546.
Full change long for all versions can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md
Docker builds are on quay.io and docker hub:
https://quay.io/repository/gmod/apollo?tab=builds https://hub.docker.com/r/gmod/apollo Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/
Note: You can find a guide upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html
Report issues if found. Active mailing list (apollo@lbl.gov) and google group.
Files
GMOD/Apollo-2.6.3.zip
Files
(94.2 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/GMOD/Apollo/tree/2.6.3 (URL)