10.5281/zenodo.4569155
https://zenodo.org/records/4569155
oai:zenodo.org:4569155
Matthias König
Matthias König
Humboldt University
YannickDuport
YannickDuport
matthiaskoenig/sbmlsim: 0.1.14
Zenodo
2021
2021-03-01
https://github.com/matthiaskoenig/sbmlsim/tree/0.1.14
10.5281/zenodo.3597770
https://zenodo.org/communities/eoscsecretariat
https://zenodo.org/communities/eu
0.1.14
Other (Open)
Release notes for sbmlsim 0.1.14
Fix #81, feature timecourse concatenation and reuse in timecoursesim
This allows simplified creation of multiple dosing timecourse simulations and reuse
of timecourse definitions in multiple simulations. E.g. repeated timecourse [tc]*3
simulator = Simulator(MODEL_REPRESSILATOR)
tc = Timecourse(
start=0,
end=50,
steps=100,
changes={"X": 10})
s = simulator._timecourse(
simulation=TimecourseSim(
[tc]*3
)
)
Fix #82, bugfix; remove time shift from discarded simulations
Fix #83, allow empty timecourses in timecoursesim
Fix #86, dependency update ray>=1.2.0
Fix #87, weighting by counts in parameter fitting
Fix #88, bugfix figure closing in parameter fitting
adding mypy configuration and initial mypy fixes
many flake8 fixes and type annotations
Fix #91, support hex colors in plot
Fix #94, update xarray>=0.17.0