Dataset Open Access

Environmental robustness of the global yeast genetic interaction network

Costanzo, Michael; Hou, Jing; Messier, Vincent; Nelson, Justin; Rahman, Mahfuzur; VanderSluis, Benjamin; Wang, Wen; Pons, Carles; Ross, Catherine; Ušaj, Matej; San Luis, Bryan-Joseph; Shuteriqi, Emira; Koch, Elizabeth N.; Aloy, Patrick; Myers, Chad L.; Boone, Charles; Andrews, Brenda


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://zenodo.org/record/4560674">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/4560674</dct:identifier>
    <foaf:page rdf:resource="https://zenodo.org/record/4560674"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Costanzo, Michael</foaf:name>
        <foaf:givenName>Michael</foaf:givenName>
        <foaf:familyName>Costanzo</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Hou, Jing</foaf:name>
        <foaf:givenName>Jing</foaf:givenName>
        <foaf:familyName>Hou</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Messier, Vincent</foaf:name>
        <foaf:givenName>Vincent</foaf:givenName>
        <foaf:familyName>Messier</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Nelson, Justin</foaf:name>
        <foaf:givenName>Justin</foaf:givenName>
        <foaf:familyName>Nelson</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Minnesota</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Rahman, Mahfuzur</foaf:name>
        <foaf:givenName>Mahfuzur</foaf:givenName>
        <foaf:familyName>Rahman</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Minnesota</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>VanderSluis, Benjamin</foaf:name>
        <foaf:givenName>Benjamin</foaf:givenName>
        <foaf:familyName>VanderSluis</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Minnesota</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-5812-6744">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-5812-6744</dct:identifier>
        <foaf:name>Wang, Wen</foaf:name>
        <foaf:givenName>Wen</foaf:givenName>
        <foaf:familyName>Wang</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Minnesota</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Pons, Carles</foaf:name>
        <foaf:givenName>Carles</foaf:givenName>
        <foaf:familyName>Pons</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Institute for Research in Biomedicine</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0002-3327-306X">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0002-3327-306X</dct:identifier>
        <foaf:name>Ross, Catherine</foaf:name>
        <foaf:givenName>Catherine</foaf:givenName>
        <foaf:familyName>Ross</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-0675-2847">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0003-0675-2847</dct:identifier>
        <foaf:name>Ušaj, Matej</foaf:name>
        <foaf:givenName>Matej</foaf:givenName>
        <foaf:familyName>Ušaj</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>San Luis, Bryan-Joseph</foaf:name>
        <foaf:givenName>Bryan-Joseph</foaf:givenName>
        <foaf:familyName>San Luis</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Shuteriqi, Emira</foaf:name>
        <foaf:givenName>Emira</foaf:givenName>
        <foaf:familyName>Shuteriqi</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Koch, Elizabeth N.</foaf:name>
        <foaf:givenName>Elizabeth N.</foaf:givenName>
        <foaf:familyName>Koch</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Minnesota</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Aloy, Patrick</foaf:name>
        <foaf:givenName>Patrick</foaf:givenName>
        <foaf:familyName>Aloy</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Institute for Research in Biomedicine</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Myers, Chad L.</foaf:name>
        <foaf:givenName>Chad L.</foaf:givenName>
        <foaf:familyName>Myers</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Minnesota</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Boone, Charles</foaf:name>
        <foaf:givenName>Charles</foaf:givenName>
        <foaf:familyName>Boone</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0001-6427-6493">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#string">0000-0001-6427-6493</dct:identifier>
        <foaf:name>Andrews, Brenda</foaf:name>
        <foaf:givenName>Brenda</foaf:givenName>
        <foaf:familyName>Andrews</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>University of Toronto</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Environmental robustness of the global yeast genetic interaction network</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2021</dct:issued>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2021-02-24</dct:issued>
    <owl:sameAs rdf:resource="https://zenodo.org/record/4560674"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://zenodo.org/record/4560674</skos:notation>
        <adms:schemeAgency>url</adms:schemeAgency>
      </adms:Identifier>
    </adms:identifier>
    <owl:sameAs rdf:resource="https://doi.org/10.5061/dryad.3r2280gfd"/>
    <dct:isPartOf rdf:resource="https://zenodo.org/communities/dryad"/>
    <dct:description>&lt;p&gt;Phenotypes associated with genetic variants can be altered by interactions with other genetic variants (GxG), with the environment (GxE), or both (GxGxE). Yeast genetic interactions have been mapped on a global scale, but the environmental influence on the plasticity of genetic networks has not been examined systematically. To assess environmental rewiring of genetic networks, we examined 14 diverse conditions and scored 30,000 functionally representative yeast gene pairs for dynamic, differential interactions. Different conditions revealed novel differential interactions, which often uncovered new functional connections between distantly related gene pairs. However, the majority of observed genetic interactions remained unchanged in different conditions, suggesting that the global yeast genetic interaction network is robust to environmental perturbation and captures the fundamental functional architecture of a eukaryotic cell.&lt;/p&gt;</dct:description>
    <dct:description>&lt;p&gt;Funding provided by: National Science Foundation&lt;br&gt;Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000001&lt;br&gt;Award Number: DBI\0953881&lt;/p&gt;&lt;p&gt;Funding provided by: National Institutes of Health&lt;br&gt;Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000002&lt;br&gt;Award Number: R01HG005853&lt;/p&gt;&lt;p&gt;Funding provided by: National Institutes of Health&lt;br&gt;Crossref Funder Registry ID: http://dx.doi.org/10.13039/100000002&lt;br&gt;Award Number: R01HG005084&lt;/p&gt;&lt;p&gt;Funding provided by: Canadian Institutes of Health Research&lt;br&gt;Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100000024&lt;br&gt;Award Number: FDN-143264&lt;/p&gt;&lt;p&gt;Funding provided by: Canadian Institutes of Health Research&lt;br&gt;Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100000024&lt;br&gt;Award Number: FDN-143265&lt;/p&gt;</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://zenodo.org/record/4560674"/>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5061/dryad.3r2280gfd"/>
        <dcat:byteSize>921348</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/4560674/files/Costanzo_et_al_Data_File_1_Conditions_Strains_Fitness.xlsx"/>
        <dcat:mediaType>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5061/dryad.3r2280gfd"/>
        <dcat:byteSize>423602</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/4560674/files/Costanzo_et_al_Data_File_2_SMF_Functional_enrichment.xlsx"/>
        <dcat:mediaType>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5061/dryad.3r2280gfd"/>
        <dcat:byteSize>112873176</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/4560674/files/Costanzo_et_al_Data_File_3_Raw_interaction_dataset.xlsx"/>
        <dcat:mediaType>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5061/dryad.3r2280gfd"/>
        <dcat:byteSize>302927</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/4560674/files/Costanzo_et_al_Data_File_4_MCMC_consensus_profiles.xlsx"/>
        <dcat:mediaType>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5061/dryad.3r2280gfd"/>
        <dcat:byteSize>246889</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/4560674/files/Costanzo_et_al_Data_File_5_Functional_coherence_analysis.xlsx"/>
        <dcat:mediaType>application/vnd.openxmlformats-officedocument.spreadsheetml.sheet</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
    <dcat:distribution>
      <dcat:Distribution>
        <dcat:accessURL rdf:resource="https://doi.org/10.5061/dryad.3r2280gfd"/>
        <dcat:byteSize>30431</dcat:byteSize>
        <dcat:downloadURL rdf:resource="https://zenodo.org/record/4560674/files/Data_File_descriptions_Readme_20210220.docx"/>
        <dcat:mediaType>application/vnd.openxmlformats-officedocument.wordprocessingml.document</dcat:mediaType>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
310
42
views
downloads
Views 310
Downloads 42
Data volume 356.4 MB
Unique views 266
Unique downloads 35

Share

Cite as