Software Open Access

User-friendly anatomical structures data from the Uberon Ontology v1.0

Daniel S. Himmelstein

This repository creates user-friendly datasets from the 2015-07-24 Uberon release. Data is extracted from the OBO format and stored as tidy TSV files. For example, a tabular listing of cross-references is extracted. Additionally, a slim term set called Uberon hetio-slim is created containing 402 anatomical structures.

Files (5.4 MB)
Name Size
uberon-v1.0.zip md5:906daabab4a6b1b655671ca4474f15e2 5.4 MB Download
Available in
Publication date:
February 4, 2016
DOI:
10.5281/zenodo.45527

Zenodo DOI Badge

Markdown 

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.45527.svg)](https://doi.org/10.5281/zenodo.45527)

reStructedText 

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.45527.svg
   :target: https://doi.org/10.5281/zenodo.45527

HTML 

<a href="https://doi.org/10.5281/zenodo.45527"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.45527.svg" alt="DOI"></a>

Image URL 

https://zenodo.org/badge/DOI/10.5281/zenodo.45527.svg

Target URL 

https://doi.org/10.5281/zenodo.45527

Keyword(s):
Uberon Anatomical structures Homo sapiens Ontology Rephetio
Related identifiers:
Supplement to:
https://github.com/dhimmel/uberon/tree/v1.0
License (for files):
Other (Open)

Share

Cite as

Export