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This upload contains the source code and user manual of HSA, the version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure. HSA is a flexible tool that jointly analyzes multiple contact maps of Hi-C data to infer 3D chromatin structure of the genome. More information can be found at: http://ouyanglab.jax.org/hsa/.
\n\nIf you use the software, we would be grateful if you cited the following paper:
\n\nZou, C., Zhang, Y., Ouyang, Z. (2016) HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure, Genome Biology, 17:40.
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