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HSA: Version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Zou, Chenchen; Zhang, Yuping; Ouyang, Zhengqing

This upload contains the source code and user manual of HSA, the version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure. HSA is a flexible tool that jointly analyzes multiple contact maps of Hi-C data to infer 3D chromatin structure of the genome. More information can be found at: http://ouyanglab.jax.org/hsa/.

If you use the software, we would be grateful if you cited the following paper:

Zou, C., Zhang, Y., Ouyang, Z. (2016) HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure, Genome Biology, 17:40.

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