Software Open Access

Accurate Brain Segmentation in Malformations of Cortical Development using Multimodal MRI

Gill, Ravnoor; Caldairou, Benoit; Bernasconi, Neda; Bernasconi, Andrea

In-house implementation of deep convolutional neural networks (V-Net) for brain extraction (removal of skull, dura mater, and cerebellum) in malformations of cortical development.

Contains pre-trained weights (training based on T1- and T2-weighted FLAIR MRI in 120 subjects), and training / inference source code.

Public GitHub repo: https://github.com/NOEL-MNI/deepMask

Files (45.4 MB)
Name Size
deepMask-main-v1.0.0.zip
md5:182203c25ae8506398be92ff9a3cdc46 		45.4 MB Download
88
74
views
downloads
All versions This version
Views 8888
Downloads 7474
Data volume 3.4 GB3.4 GB
Unique views 7878
Unique downloads 3232
More info on how stats are collected.
Indexed in
Publication date:
September 1, 2021
DOI:
10.5281/zenodo.4521716

Zenodo DOI Badge

DOI 

10.5281/zenodo.4521716

Markdown 

[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4521716.svg)](https://doi.org/10.5281/zenodo.4521716)

reStructedText 

.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.4521716.svg
   :target: https://doi.org/10.5281/zenodo.4521716

HTML 

<a href="https://doi.org/10.5281/zenodo.4521716"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.4521716.svg" alt="DOI"></a>

Image URL 

https://zenodo.org/badge/DOI/10.5281/zenodo.4521716.svg

Target URL 

https://doi.org/10.5281/zenodo.4521716

Keyword(s):
malformations of cortical development epilepsy brain segmentation skull stripping deep learning
Related identifiers:
Cited by
License (for files):
Creative Commons Attribution 4.0 International

Versions

Version 1.0.0 10.5281/zenodo.4521716 Sep 1, 2021
Cite all versions? You can cite all versions by using the DOI 10.5281/zenodo.4521715. This DOI represents all versions, and will always resolve to the latest one. Read more.

Share

Cite as

Export