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mulTree: v1.2

Thomas Guillerme; Kevin Healy


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  <identifier identifierType="DOI">10.5281/zenodo.45097</identifier>
  <creators>
    <creator>
      <creatorName>Thomas Guillerme</creatorName>
      <affiliation>Trinity College Dublin</affiliation>
    </creator>
    <creator>
      <creatorName>Kevin Healy</creatorName>
    </creator>
  </creators>
  <titles>
    <title>mulTree: v1.2</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2016</publicationYear>
  <dates>
    <date dateType="Issued">2016-01-22</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/45097</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/TGuillerme/mulTree/tree/v1.2</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.593013</relatedIdentifier>
  </relatedIdentifiers>
  <version>v1.2</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;ul&gt;
&lt;li&gt;2016/01/22  - &lt;strong&gt;v1.2&lt;/strong&gt;

&lt;ul&gt;
&lt;li&gt;complete new architectural structure!&lt;/li&gt;
&lt;li&gt;all the functions are now unit tested!&lt;/li&gt;
&lt;li&gt;all manuals are now written in Roxygen2 format!&lt;/li&gt;
&lt;li&gt;many functions arguments names have been modified, please check individual functions manual.&lt;/li&gt;
&lt;li&gt;
rTreeBind is renamed to tree.bind.&lt;/li&gt;
&lt;li&gt;In as.mulTree, the argument species is now taxa.&lt;/li&gt;
&lt;li&gt;
mulTree output: when output chain name already exists in current directory, the function now asks if user wants to overwrite the existing files.&lt;/li&gt;
&lt;li&gt;In read.mulTree, the argument mulTree.mcmc is now mulTree.chain.&lt;/li&gt;
&lt;li&gt;In summary.mulTree, the argument mulTree.mcmc is now mulTree.results and the argument CI is now prob.&lt;/li&gt;
&lt;li&gt;
summary.mulTree now outputs a c(&amp;quot;matrix&amp;quot;, &amp;quot;mulTree&amp;quot;) class object.&lt;/li&gt;
&lt;li&gt;In plot.mulTree, the argument mulTree.mcmc must now be an object returned from summary.mulTree.&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;/ul&gt;</description>
  </descriptions>
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