Project deliverable Open Access

Deliverables of Codes4strains project (Part1)

Hennart Melanie; Brisse Sylvain

Background

One of the main objectives of the PhD project is to develop a novel nomenclature system, potentially applicable to all bacterial pathogens. Here we first focus is on a highly antibiotic resistant bacterial pathogen, K. pneumoniae (Kp), and on a foodborne bacterial pathogen, Escherichia coli (Ec). The aim is to combine two main microbial strain nomenclatures approaches that are currently being used separately.

(further details: https://onehealthejp.eu/codes4strains/)

Deliverables

D-PhD16-2.1: Pilot Genome set

D-PhD16-3.1: cgMLST schemes for Kp and Ec

D-PhD16-3.3: SNapperDB Ec analysed for full dataset

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