Published January 28, 2021
| Version 1
Project deliverable
Open
Deliverables of Codes4strains project (Part1)
Creators
- 1. Institut Pasteur, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France
Description
Background
One of the main objectives of the PhD project is to develop a novel nomenclature system, potentially applicable to all bacterial pathogens. Here we first focus is on a highly antibiotic resistant bacterial pathogen, K. pneumoniae (Kp), and on a foodborne bacterial pathogen, Escherichia coli (Ec). The aim is to combine two main microbial strain nomenclatures approaches that are currently being used separately.
(further details: https://onehealthejp.eu/codes4strains/)
Deliverables
D-PhD16-2.1: Pilot Genome set
D-PhD16-3.1: cgMLST schemes for Kp and Ec
D-PhD16-3.3: SNapperDB Ec analysed for full dataset