{ "access": { "embargo": { "active": false, "reason": null }, "files": "public", "record": "public", "status": "open" }, "created": "2021-01-20T19:37:02.930450+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "files": { "count": 34, "enabled": true, "entries": { "ASM294v2_permissive_UniBind_LOLA.RDS": { "checksum": "md5:318fe2e0b1b0511f9fee5d617e061394", "ext": "rds", "id": "060bd5e7-e3f6-4ab3-9bff-a1f6ec9269a1", "key": "ASM294v2_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 1481 }, "ASM294v2_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:31a7521f138b640f5d2ac249286027dd", "ext": "rds", "id": "bac7edc7-97fd-4d3b-8808-49c9419e68bb", "key": "ASM294v2_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 710 }, "GRCz11_permissive_UniBind_LOLA.RDS": { "checksum": "md5:8562380508dac3057b0201ae3a287f67", "ext": "rds", "id": "1b41eda2-463e-45da-8968-fe294cde4325", "key": "GRCz11_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 655150 }, "GRCz11_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:48739a6278fa13a17e421ac449d06124", "ext": "rds", "id": "02798c53-3967-416e-afbf-4e2b3ae98d67", "key": "GRCz11_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 348866 }, "GRCz11_robust_UniBind_LOLA.RDS": { "checksum": "md5:8de5aaa71e29f4c783a7b58b2aeb02dd", "ext": "rds", "id": "9618068f-3a4e-4f76-b69f-fa787548d911", "key": "GRCz11_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 339102 }, "GRCz11_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:601849a546eaf402efe76707ebcd8edc", "ext": "rds", "id": "ebd99e6b-778f-4e52-848f-b9a060c63a2b", "key": "GRCz11_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 172689 }, "R64-1-1_permissive_UniBind_LOLA.RDS": { "checksum": "md5:967dd534b286467dd1cb3f35f11dfc21", "ext": "rds", "id": "83c4d70a-889e-464d-b047-52213991434d", "key": "R64-1-1_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 73565 }, "R64-1-1_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:098e68e6cc43c128d49eb917e7b95147", "ext": "rds", "id": "f63caadd-dc9d-40f6-9cdd-48a99d959162", "key": "R64-1-1_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 32077 }, "R64-1-1_robust_UniBind_LOLA.RDS": { "checksum": "md5:11e569eda46199add20bbc24990a6030", "ext": "rds", "id": "cb5a98bd-283d-4fdf-b793-ebe9a3d8e724", "key": "R64-1-1_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 33969 }, "R64-1-1_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:ba32bceb9e7728fe84619eff6b4242b8", "ext": "rds", "id": "05e03f2a-8756-4057-a4bb-cb18d65fb270", "key": "R64-1-1_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 15501 }, "Rnor_6.0_permissive_UniBind_LOLA.RDS": { "checksum": "md5:3dc34496839416af97cce06134e00419", "ext": "rds", "id": "14c792fc-e479-46c9-8b41-263513ba4edb", "key": "Rnor_6.0_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 12996150 }, "Rnor_6.0_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:04b9548d746bba5effbd08af9a88ce55", "ext": "rds", "id": "53c64159-5338-4ac3-91c6-a5eea3d67154", "key": "Rnor_6.0_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 3909501 }, "Rnor_6.0_robust_UniBind_LOLA.RDS": { "checksum": "md5:a2de5e81a46fa8c67654eba73e927ae4", "ext": "rds", "id": "ec482bed-c4be-428c-b7c8-bbd2450b1ad5", "key": "Rnor_6.0_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 10781818 }, "Rnor_6.0_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:d713fc8fcf23fb32ae6e58c6e9693a5e", "ext": "rds", "id": "94358126-c4ba-46de-8892-79b42f934542", "key": "Rnor_6.0_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 3466730 }, "TAIR10_permissive_UniBind_LOLA.RDS": { "checksum": "md5:2dd4f96eba9c3ea78cb8e69161d8c2f2", "ext": "rds", "id": "eb05b894-90e2-428e-ba4e-cfa70a027a00", "key": "TAIR10_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 1676535 }, "TAIR10_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:6951c89258c1fba0fe60ec7cac3402fa", "ext": "rds", "id": "f455e64c-01c9-45ba-8fc1-9f3f4c5c8a99", "key": "TAIR10_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 668874 }, "TAIR10_robust_UniBind_LOLA.RDS": { "checksum": "md5:481cdbff9b3fa033bbe745f6cabcc644", "ext": "rds", "id": "44f81bb7-213c-4955-8a7b-d18f32d851ba", "key": "TAIR10_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 1581251 }, "TAIR10_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:167cec5a63095916e89ab25260c3616b", "ext": "rds", "id": "1715f454-51d9-4669-824c-f0391c1f0216", "key": "TAIR10_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 628177 }, "WBcel235_permissive_UniBind_LOLA.RDS": { "checksum": "md5:40adf4aa83059eda20fe5c6a5d994980", "ext": "rds", "id": "ff916e70-2f78-4ad4-b2c3-5aaca9c8a275", "key": "WBcel235_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 1205398 }, "WBcel235_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:176eda6c6aabecbe71c09d26b2193697", "ext": "rds", "id": "eb19dd0d-b982-47cf-aab9-c071b5b574fd", "key": "WBcel235_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 448545 }, "WBcel235_robust_UniBind_LOLA.RDS": { "checksum": "md5:c26892b61f925b92e3b97cd9bdf86efc", "ext": "rds", "id": "ccabe4a0-3395-4890-86ba-176c171a0444", "key": "WBcel235_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 884818 }, "WBcel235_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:146844f1a0a38637e9e7b9d6483205b3", "ext": "rds", "id": "9f8b1f3b-7598-4ab7-b968-0ce72835abeb", "key": "WBcel235_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 361964 }, "dm6_permissive_UniBind_LOLA.RDS": { "checksum": "md5:022d7582b8f05e503cc4fbb3c0d26e68", "ext": "rds", "id": "b04ac4f3-2fd1-4a63-b5a5-1b219782071a", "key": "dm6_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 1767863 }, "dm6_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:e8bcf444a4d93b9d42b79b8bf3bdb000", "ext": "rds", "id": "cf05d396-bdfe-4417-9a2e-98004087ad0b", "key": "dm6_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 668168 }, "dm6_robust_UniBind_LOLA.RDS": { "checksum": "md5:6305d181da7a275bce2986334994e40f", "ext": "rds", "id": "cd9667e9-fcdb-4aa4-b74c-afa95b0b9efc", "key": "dm6_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 1211764 }, "dm6_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:76b30dd1184f356a58f5690cc3c65df0", "ext": "rds", "id": "c6177066-4621-4d9d-ada7-84ca43861dfb", "key": "dm6_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 375625 }, "hg38_permissive_UniBind_LOLA.RDS": { "checksum": "md5:922e7ac22a40eeeb4f84327d5ff518c6", "ext": "rds", "id": "b098df60-644f-4b93-9d07-d3ef43eb0bf6", "key": "hg38_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 898375895 }, "hg38_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:2008524ee551d9e69fbdef3b526fa5d9", "ext": "rds", "id": "21fcbe6f-9fae-4b62-afe1-c34af9ddab18", "key": "hg38_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 139758151 }, "hg38_robust_UniBind_LOLA.RDS": { "checksum": "md5:f812850bab11f612b22eeb43d62a70a9", "ext": "rds", "id": "7a83e7fe-efe5-42fc-9780-d47efc48d5bb", "key": "hg38_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 796555186 }, "hg38_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:cd1ce466101f2c800422b2fcc2aefc4a", "ext": "rds", "id": "18b3c628-31ab-4696-a80f-e9a8868ff5e9", "key": "hg38_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 106214570 }, "mm10_permissive_UniBind_LOLA.RDS": { "checksum": "md5:93dd4e29481997a5d87dc2ac29326473", "ext": "rds", "id": "82d577c5-dab7-454c-9e95-07220f95a285", "key": "mm10_permissive_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 796981577 }, "mm10_permissive_UniBind_LOLA_universe.RDS": { "checksum": "md5:8863e9cbf64e5bfe0345ddccdb5326ac", "ext": "rds", "id": "cc5a0bf0-db50-4402-b1f3-37c48a15eac1", "key": "mm10_permissive_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 123859075 }, "mm10_robust_UniBind_LOLA.RDS": { "checksum": "md5:6725e91a0f26451bac0075336666e857", "ext": "rds", "id": "013a738c-e2bc-4c31-9353-eda076f313a1", "key": "mm10_robust_UniBind_LOLA.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 694902492 }, "mm10_robust_UniBind_LOLA_universe.RDS": { "checksum": "md5:26686c1a4e3845a1e45e3937425cc4ed", "ext": "rds", "id": "d8a127d8-0c6c-4127-beb5-b7a402275eef", "key": "mm10_robust_UniBind_LOLA_universe.RDS", "metadata": null, "mimetype": "application/octet-stream", "size": 91603231 } }, "order": [], "total_bytes": 3692556468 }, "id": "4452896", "is_draft": false, "is_published": true, "links": { "access": "https://zenodo.org/api/records/4452896/access", "access_links": "https://zenodo.org/api/records/4452896/access/links", "access_request": "https://zenodo.org/api/records/4452896/access/request", "access_users": "https://zenodo.org/api/records/4452896/access/users", "archive": "https://zenodo.org/api/records/4452896/files-archive", "archive_media": "https://zenodo.org/api/records/4452896/media-files-archive", "communities": "https://zenodo.org/api/records/4452896/communities", "communities-suggestions": "https://zenodo.org/api/records/4452896/communities-suggestions", "doi": "https://doi.org/10.5281/zenodo.4452896", "draft": "https://zenodo.org/api/records/4452896/draft", "files": "https://zenodo.org/api/records/4452896/files", "latest": "https://zenodo.org/api/records/4452896/versions/latest", "latest_html": "https://zenodo.org/records/4452896/latest", "media_files": "https://zenodo.org/api/records/4452896/media-files", "parent": "https://zenodo.org/api/records/4161027", "parent_doi": "https://zenodo.org/doi/10.5281/zenodo.4161027", "parent_html": "https://zenodo.org/records/4161027", "requests": "https://zenodo.org/api/records/4452896/requests", "reserve_doi": "https://zenodo.org/api/records/4452896/draft/pids/doi", "self": "https://zenodo.org/api/records/4452896", "self_doi": "https://zenodo.org/doi/10.5281/zenodo.4452896", "self_html": "https://zenodo.org/records/4452896", "self_iiif_manifest": "https://zenodo.org/api/iiif/record:4452896/manifest", "self_iiif_sequence": "https://zenodo.org/api/iiif/record:4452896/sequence/default", "versions": "https://zenodo.org/api/records/4452896/versions" }, "media_files": { "count": 0, "enabled": false, "entries": {}, "order": [], "total_bytes": 0 }, "metadata": { "creators": [ { "affiliations": [ { "name": "University of Oslo" } ], "person_or_org": { "family_name": "Rafael Riudavets Puig", "identifiers": [ { "identifier": "0000-0002-2855-9952", "scheme": "orcid" } ], "name": "Rafael Riudavets Puig", "type": "personal" } }, { "affiliations": [ { "name": "University of Oslo" } ], "person_or_org": { "family_name": "Paul Boddie", "name": "Paul Boddie", "type": "personal" } }, { "affiliations": [ { "name": "Stanford Cancer Institute" } ], "person_or_org": { "family_name": "Aziz Khan", "identifiers": [ { "identifier": "0000-0002-6459-6224", "scheme": "orcid" } ], "name": "Aziz Khan", "type": "personal" } }, { "affiliations": [ { "name": "University of Oslo" } ], "person_or_org": { "family_name": "Jaime Abraham Castro Mondrag\u00f3n", "identifiers": [ { "identifier": "0000-0003-4069-357X", "scheme": "orcid" } ], "name": "Jaime Abraham Castro Mondrag\u00f3n", "type": "personal" } }, { "affiliations": [ { "name": "University of Oslo" } ], "person_or_org": { "family_name": "Anthony Mathelier", "identifiers": [ { "identifier": "0000-0001-5127-5459", "scheme": "orcid" } ], "name": "Anthony Mathelier", "type": "personal" } } ], "description": "
This repository contains all LOLA databases used in the UniBind 2.0 enrichment tool. For each organism, we provide the LOLA databases for all TFBS sets and the complete universe of TFBSs contained in the robust and permissive collections. The databases are provided as .RDS R objects, which can be directly loaded into R or used as inputs for the command-line UniBind enrichment tool.
", "publication_date": "2020-11-02", "publisher": "Zenodo", "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited." }, "icon": "cc-by-icon", "id": "cc-by-4.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/licenses/by/4.0/legalcode" }, "title": { "en": "Creative Commons Attribution 4.0 International" } } ], "title": "UniBind 2.0 - LOLA databases for the robust and permissive collections", "version": "2" }, "parent": { "access": { "owned_by": { "user": 106391 } }, "communities": {}, "id": "4161027", "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.4161027", "provider": "datacite" } } }, "pids": { "doi": { "client": "datacite", "identifier": "10.5281/zenodo.4452896", "provider": "datacite" }, "oai": { "identifier": "oai:zenodo.org:4452896", "provider": "oai" } }, "revision_id": 3, "stats": { "all_versions": { "data_volume": 273387912565.0, "downloads": 1442, "unique_downloads": 838, "unique_views": 887, "views": 944 }, "this_version": { "data_volume": 18417180753.0, "downloads": 130, "unique_downloads": 74, "unique_views": 113, "views": 118 } }, "status": "published", "updated": "2021-04-20T11:16:52.147570+00:00", "versions": { "index": 2, "is_latest": false } }