There is a newer version of this record available.

Dataset Open Access

Local Z Projector example dataset and parameters 02

Léo Valon; Jean-Yves Tinevez


MARC21 XML Export

<?xml version='1.0' encoding='UTF-8'?>
<record xmlns="http://www.loc.gov/MARC21/slim">
  <leader>00000nmm##2200000uu#4500</leader>
  <controlfield tag="005">20210320190002.0</controlfield>
  <controlfield tag="001">4449999</controlfield>
  <datafield tag="700" ind1=" " ind2=" ">
    <subfield code="u">Institut Pasteur</subfield>
    <subfield code="0">(orcid)0000-0002-0998-4718</subfield>
    <subfield code="a">Jean-Yves Tinevez</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">554</subfield>
    <subfield code="z">md5:06c4957440e9838660967f18d0be9d60</subfield>
    <subfield code="u">https://zenodo.org/record/4449999/files/2018_03_08_cad_cic_LSM.extractsurface.localzprojector</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">52541</subfield>
    <subfield code="z">md5:20264a081113390d2a7ed416153b165a</subfield>
    <subfield code="u">https://zenodo.org/record/4449999/files/2018_03_08_cad_cic_LSM-params-screenshot.png</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">419</subfield>
    <subfield code="z">md5:06b98d5bca6f6460bcbdb01e0c4d2e97</subfield>
    <subfield code="u">https://zenodo.org/record/4449999/files/2018_03_08_cad_cic_LSM.referencesurface.localzprojector</subfield>
  </datafield>
  <datafield tag="856" ind1="4" ind2=" ">
    <subfield code="s">2319623715</subfield>
    <subfield code="z">md5:8cd3ad66289ce2afa4ce898b9ef18a0a</subfield>
    <subfield code="u">https://zenodo.org/record/4449999/files/2018_03_08_cad_cic_LSM.tif</subfield>
  </datafield>
  <datafield tag="542" ind1=" " ind2=" ">
    <subfield code="l">open</subfield>
  </datafield>
  <datafield tag="260" ind1=" " ind2=" ">
    <subfield code="c">2021-01-19</subfield>
  </datafield>
  <datafield tag="909" ind1="C" ind2="O">
    <subfield code="p">openaire_data</subfield>
    <subfield code="o">oai:zenodo.org:4449999</subfield>
  </datafield>
  <datafield tag="100" ind1=" " ind2=" ">
    <subfield code="u">Institut Pasteur</subfield>
    <subfield code="a">Léo Valon</subfield>
  </datafield>
  <datafield tag="245" ind1=" " ind2=" ">
    <subfield code="a">Local Z Projector example dataset and parameters 02</subfield>
  </datafield>
  <datafield tag="536" ind1=" " ind2=" ">
    <subfield code="c">789573</subfield>
    <subfield code="a">Study of the mechanical cues driving cell competition and its role in pretumoral cell expansion</subfield>
  </datafield>
  <datafield tag="536" ind1=" " ind2=" ">
    <subfield code="c">758457</subfield>
    <subfield code="a">Competition for Space in Development and Diseases</subfield>
  </datafield>
  <datafield tag="540" ind1=" " ind2=" ">
    <subfield code="u">https://creativecommons.org/licenses/by/4.0/legalcode</subfield>
    <subfield code="a">Creative Commons Attribution 4.0 International</subfield>
  </datafield>
  <datafield tag="650" ind1="1" ind2="7">
    <subfield code="a">cc-by</subfield>
    <subfield code="2">opendefinition.org</subfield>
  </datafield>
  <datafield tag="520" ind1=" " ind2=" ">
    <subfield code="a">&lt;p&gt;Drosophila pupa notum, captured with a laser-scanning confocal&amp;nbsp;microscope (LSM 880, Zeiss). Pixel size 0.188 &amp;micro;m, z step 1 &amp;micro;m.&lt;/p&gt;

&lt;p&gt;This dataset&amp;nbsp; also contains the parameters to generate the reference surface and local projection. It is meant to be used with the Fiji plugin called &amp;#39;LocalZProjector&amp;#39;:&amp;nbsp;&lt;a href="https://gitlab.pasteur.fr/iah-public/localzprojector"&gt;https://gitlab.pasteur.fr/iah-public/localzprojector&lt;/a&gt;. The two &lt;em&gt;*.localzprojector &lt;/em&gt;files can be loaded directly in the plugin to load adequate parameters.&lt;/p&gt;

&lt;p&gt;See the accompanying paper:&amp;nbsp;&lt;em&gt;DProj: A toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images.&lt;/em&gt;&lt;/p&gt;

&lt;p&gt;&lt;a href="https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2"&gt;https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;</subfield>
  </datafield>
  <datafield tag="773" ind1=" " ind2=" ">
    <subfield code="n">doi</subfield>
    <subfield code="i">isVersionOf</subfield>
    <subfield code="a">10.5281/zenodo.4449998</subfield>
  </datafield>
  <datafield tag="024" ind1=" " ind2=" ">
    <subfield code="a">10.5281/zenodo.4449999</subfield>
    <subfield code="2">doi</subfield>
  </datafield>
  <datafield tag="980" ind1=" " ind2=" ">
    <subfield code="a">dataset</subfield>
  </datafield>
</record>
62
37
views
downloads
All versions This version
Views 6245
Downloads 3726
Data volume 32.8 GB27.8 GB
Unique views 5541
Unique downloads 1912

Share

Cite as