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Local Z Projector example dataset and parameters 02

Léo Valon; Jean-Yves Tinevez


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  <identifier identifierType="DOI">10.5281/zenodo.4449999</identifier>
  <creators>
    <creator>
      <creatorName>Léo Valon</creatorName>
      <affiliation>Institut Pasteur</affiliation>
    </creator>
    <creator>
      <creatorName>Jean-Yves Tinevez</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-0998-4718</nameIdentifier>
      <affiliation>Institut Pasteur</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Local Z Projector example dataset and parameters 02</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2021</publicationYear>
  <dates>
    <date dateType="Issued">2021-01-19</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4449999</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.4449998</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Drosophila pupa notum, captured with a laser-scanning confocal&amp;nbsp;microscope (LSM 880, Zeiss). Pixel size 0.188 &amp;micro;m, z step 1 &amp;micro;m.&lt;/p&gt;

&lt;p&gt;This dataset&amp;nbsp; also contains the parameters to generate the reference surface and local projection. It is meant to be used with the Fiji plugin called &amp;#39;LocalZProjector&amp;#39;:&amp;nbsp;&lt;a href="https://gitlab.pasteur.fr/iah-public/localzprojector"&gt;https://gitlab.pasteur.fr/iah-public/localzprojector&lt;/a&gt;. The two &lt;em&gt;*.localzprojector &lt;/em&gt;files can be loaded directly in the plugin to load adequate parameters.&lt;/p&gt;

&lt;p&gt;See the accompanying paper:&amp;nbsp;&lt;em&gt;DProj: A toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images.&lt;/em&gt;&lt;/p&gt;

&lt;p&gt;&lt;a href="https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2"&gt;https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2&lt;/a&gt;&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>European Commission</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000780</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/EC/H2020/789573/">789573</awardNumber>
      <awardTitle>Study of the mechanical cues driving cell competition and its role in pretumoral cell expansion</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>European Commission</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000780</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/EC/H2020/758457/">758457</awardNumber>
      <awardTitle>Competition for Space in Development and Diseases</awardTitle>
    </fundingReference>
  </fundingReferences>
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