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Local Z Projector example dataset and parameters 01

Léo Valon; Jean-Yves Tinevez


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  <dc:creator>Léo Valon</dc:creator>
  <dc:creator>Jean-Yves Tinevez</dc:creator>
  <dc:date>2021-01-19</dc:date>
  <dc:description>Drosophila pupa notum, captured with a laser-scanning confocal microscope (LSM 880, Zeiss). Pixel size 0.188 µm, z step 1 µm.

This dataset  also contains the parameters to generate the reference surface and local projection, also included. It is meant to be used with the Fiji plugin called 'LocalZProjector': https://gitlab.pasteur.fr/iah-public/localzprojector. The two *.localzprojector files can be loaded directly in the plugin to load adequate parameters.

See the accompanying paper: DProj: A toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images.

https://www.biorxiv.org/content/10.1101/2021.01.15.426809v2

This is a downsampled version of the dataset used to generate the figures 1, 2 and 3 in this paper, as well as the comparison in table 1.

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  <dc:identifier>https://zenodo.org/record/4449952</dc:identifier>
  <dc:identifier>10.5281/zenodo.4449952</dc:identifier>
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  <dc:relation>info:eu-repo/grantAgreement/EC/H2020/789573/</dc:relation>
  <dc:relation>info:eu-repo/grantAgreement/EC/H2020/758457/</dc:relation>
  <dc:relation>doi:10.5281/zenodo.4449951</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
  <dc:title>Local Z Projector example dataset and parameters 01</dc:title>
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