December 25, 2020 Software Open Access

connectomicslab/connectomemapper3: Connectome Mapper v3.0.0-RC2

Tourbier, Sebastien; Aleman-Gomez, Yasser; Mullier, Emeline; Griffa, Alessandra; Bach Cuadra, Meritxell; Hagmann, Patric

This is the second release candidate v3.0.0-RC2 of Connectome Mapper which merges PR #45.

Summary of changes is available at the documentation.

Complete list of changes with respect to previous 3.0.0-RC1:

• CI: fix double to single quotes in deploy_singularity_release [skip ci] (2 minutes ago) - commit 7bbac75
• Merge remote-tracking branch 'origin/master' [skip ci] (3 hours ago) - commit 237596b
• VERSION: update release date in cmp/info.py [skip ci] (3 hours ago) - commit 5c0069c
• DOC: update docker command in README [skip ci] (3 hours ago) - commit d262303
• CI: update creation of singularity token for deploy_singularity (5 hours ago) - commit 818f3f5
• Merge pull request #45 from connectomicslab/v3.0.0-RC2-dev (5 hours ago) - commit d9135ac
• Merge pull request #58 from connectomicslab/57_documentation_v3.0.0-RC2-dev [skip ci] (5 hours ago) - commit cc47e0e
• DOC: update description of new options in changes.rst [skip ci] (5 hours ago) - commit d1a3799
• DOC: update release date in changes.rst [skip ci] (5 hours ago) - commit 8ff2b3a
• DOC: fix sphinx version that might fix correct rendering of figures in PDF [skip ci] (5 hours ago) - commit f3769cb
• DOC: update link to https://sylabs.io/ in usage.rst [skip ci] (6 hours ago) - commit 1f092bc
• DOC: review indent of singularity run example [skip ci] (6 hours ago) - commit 762299c
• DOC: update references [skip ci] (6 hours ago) - commit 323a36e
• DOC: update runonhpc.rst [skip ci] (6 hours ago) - commit 18e797c
• DOC: rename page for api_doc [skip ci] (6 hours ago) - commit 5405c4f
• DOC: update runonhpc.rst [skip ci] (6 hours ago) - commit 590306e
• Merge branch 'v3.0.0-RC2-dev' into 57_documentation_v3.0.0-RC2-dev [skip ci] (7 hours ago) - commit 2c586eb
• DOC: update doc about singularity and datalad [skip ci] (7 hours ago) - commit eae2a37
• DOC: update list of changes [skip ci] (7 hours ago) - commit 958065f
• Merge pull request #56 from connectomicslab/55_singularity_v3.0.0-RC2-dev (8 hours ago) - commit f2d772a
• MAINT: correct variable name to be PEP8 compliant (17 hours ago) - commit 4e518c1
• FIX: rename variables correctly in cmtklib/parcellation.py and correct indent (18 hours ago) - commit 853b963
• DOC: add docstrings and reviewed indents in run.py [skip ci] (23 hours ago) - commit a48a986
• MAINT: review name and unused variables in cmtklib/parcellation.py (24 hours ago) - commit 22e96c2
• FIX: config files in BIDS App GUI [skip ci] (25 hours ago) - commit e9e4449
• FIX: mapping of config files in docker run command generated by GUI [skip ci] (25 hours ago) - commit df8728a
• MAINT: remove unnecessary parenthesis [skip ci] (26 hours ago) - commit 71f0122
• MAINT: code cleaning (27 hours ago) - commit 1b75da6
• MAINT: simplify expression (27 hours ago) - commit 4663f13
• Revert "MAINT: simplify expression" (27 hours ago) - commit ac9aed2
• MAINT: simplify expression (27 hours ago) - commit 1ce54bd
• FIX: correct Dipy PeakAndMetrics.shm_coeffs (27 hours ago) - commit 4f29c2d
• DOC: correct docstring issues (27 hours ago) - commit 80b4e64
• PEP: correct all PEP8 code style errors reported by pycharm (28 hours ago) - commit 43c18ba
• ENH: Generate docker run command in GUI with new BIDS App options flags to control RDG and multithreading [skip ci] (30 hours ago) - commit ea7559e
• FIX: map appropriately the configuration files in the docker run command generated by the GUI [skip ci] (31 hours ago) - commit 53c5dc7
• ENH: added new traits in the BIDS App GUI to control RDG and multi-threading and reviewed layout [skip ci] (31 hours ago) - commit 0784728
• Merge branch 'v3.0.0-RC2-dev' into 55_singularity_v3.0.0-RC2-dev (33 hours ago) - commit b4877b9
• REF: review list, name, and default value of parameters for RDG and multi-threading in parser.py and run.py (33 hours ago) - commit 4538ac3
• Merge pull request #60 from connectomicslab/reproducibility_control_v3.0.0-RC2-dev (34 hours ago) - commit d066415
• TEST: fix name of output files (34 hours ago) - commit 3f2c618
• CI: enable and update difference check of list of outputs for singularity tests (2 days ago) - commit c87ca63
• TEST: updated list of outputs for singularity test (2 days ago) - commit 0e90343
• TYPO: corrected to args.set_mkl_num_threads in run.py (2 days ago) - commit d77b4e7
• ENH: add options to BIDS App to fix multiple envvars related to random generator seed and number of threads (2 days ago) - commit 247ed73
• MAINT: review message when report is sent to analytics [skip ci] (2 days ago) - commit 89a75c7
• FIX: set self.number_of_threads_max and added comments for dmri/fmri data check [skip ci] (2 days ago) - commit 574e0ae
• DOCKER: remove build-essential after building mrtrix [skip ci] (2 days ago) - commit 0f934f6
• CI: review order of jobs to give priority to test_singularity [skip ci] (2 days ago) - commit 3a2febc
• ENH: display configuration of diffusion and or fmri pipeline in BIDS App Window if inputs are available [skip ci] (2 days ago) - commit 7f9d988
• DOCKER: Remove packages for qt4 and opengl libraries as mrtrix is build with -nogui [skip ci] (2 days ago) - commit 4af790b
• DOCKER: edit cleaning of installation step of matlab for freesurfer [skip ci] (2 days ago) - commit 422de2e
• DOC: update comment for FSL 5 python 3 patch [skip ci] (2 days ago) - commit a49611f
• CI: review job order/dependence for singularity build and tests (2 days ago) - commit 13f9cf3
• DOCKER: add patch from ndmg for FSL 5.0.9 and python (2 days ago) - commit c52e4d9
• REVERT: remove v as prefix to extracted version in build_bidsapp.sh [skip ci] (2 days ago) - commit 920d2d0
• DOCKER: remove comment that raised an empty continuation line [skip ci] (2 days ago) - commit 57212d3
• DOCKER: fix empty continuation line (2 days ago) - commit 625de0a
• TYPO: add v as prefix to extracted version in build_bidsapp.sh (2 days ago) - commit 53ffc89
• DOCKER: review cleaning of docker image and install fsl 5.0.9 much more light (2 days ago) - commit 586d643
• DOCKER: correct paths (3 days ago) - commit cb9408b
• DOCKER: refactoring to use only one docker file with multi-stage (3 days ago) - commit 676a6ea
• DOCKER: removed resources from .dockerignore (3 days ago) - commit b474efb
• CONDA: move obspy (3 days ago) - commit f68ae9c
• DOCKER: remove bin/freeview (3 days ago) - commit ff515e1
• DOCKER: removed lib/vtk bin/qt.conf from exclude in freesurfer (3 days ago) - commit d2708a2
• DOCKER: exclude freeview related files when extracting freesurfer (3 days ago) - commit 6f4771a
• DOCKER: review conda bin path (3 days ago) - commit 5c29c26
• DOCKER: add -y to apt-get remove curl (3 days ago) - commit daf20d7
• DOCKER: add -y to apt-get remove curl (3 days ago) - commit 3aef9b2
• CI: revert back to use docker registry for singularity build (3 days ago) - commit 5044762
• DOCKER: clean and try to reduce layer size (3 days ago) - commit 3caeb46
• DOCKER: add folders to be ignored in .dockerignore (3 days ago) - commit 4b9cb3c
• CI: review singularity build with docker-deamon and show storage information (2) (3 days ago) - commit b0ba184
• CI: review singularity build with docker-deamon and show storage information (3 days ago) - commit d154709
• CI: add SINGULARITY_DISABLE_CACHE=true (6 days ago) - commit 76a9dce
• CI: add --debug -v to singularity build (6 days ago) - commit 66e4972
• CI: try to set tmp dir environment variables directly at singularity build (6 days ago) - commit 4b934d9
• CI: try to set TMPDIR for singularity build (6 days ago) - commit 3f65016
• FIX: docker run command generated by GUI [skip ci] (6 days ago) - commit 54e7ba3
• FIX: updated label for sift in configurator GUI [skip ci] (6 days ago) - commit 697a97e
• FIX: size of image icon for quality check button in main GUI [skip ci] (6 days ago) - commit c5ef30a
• FIX: corrected sift2 -> sift [skip ci] (6 days ago) - commit 27a61ef
• FIX: do not resize image icons for buttons of main GUI [skip ci] (6 days ago) - commit 5aba00e
• CI: remove /tmp/cache/docker.tar.gz in job after loading (6 days ago) - commit e6118fa
• CI: try to set different tmp cache dir for singularity build for resolving no space left on device error (6 days ago) - commit 0bae5a7
• Merge branch 'v3.0.0-RC2-dev' into 55_singularity_v3.0.0-RC2-dev (7 days ago) - commit aaa9d6d
• Merge pull request #52 from connectomicslab/48_sift2_v3.0.0-RC2 (7 days ago) - commit 8e96279
• CI: show docker images to see if possible to remove one to reduce size on disk (7 days ago) - commit ab1404d
• DOC: update usage.rst [skip ci] (7 days ago) - commit 6da7dd9
• DOC: update changes.rst [skip ci] (7 days ago) - commit b8a819c
• DOC: update changes.rst [skip ci] (7 days ago) - commit 4343af7
• DOC: add changes for version 3.0.0-RC2 [skip ci] (7 days ago) - commit 261a99a
• DOC: add warning regarding the little tracker [skip ci] (7 days ago) - commit 5b9c9d8
• FIX: correct indent in .circleci/config.yml (7 days ago) - commit 7239aa4
• FIX: correct typo in .circleci/config.yml (7 days ago) - commit 68bd9f3
• ENH: add jobs to build, test and deploy the singularity image to sylabs.io (#55) (7 days ago) - commit 46d6ff5
• FIX: corrected code (7 days ago) - commit 37b46c5
• TEST: updated list of outputs and re-enable diff check for tests 01 and 02 (7 days ago) - commit 7c18c83
• MAINT: code layout (8 days ago) - commit 94236d3
• ENH: use SIFT instead of SIFT2 to filter tractogram (8 days ago) - commit 9688410
• FIX: add act_file input to FilterTractogram (8 days ago) - commit 2609789
• DOC: add new sift2 config to docstring (8 days ago) - commit a30fe9c
• REV: review rescaled images of buttons for GUI windows (8 days ago) - commit 32f18b0
• MAINT: code cleaning and code style in cmpbidsappmanager (8 days ago) - commit fa60267
• ADD: rescaled images of buttons for GUI windows (8 days ago) - commit 5e66c47
• FIX: display of QPushButton for pipeline stages and the different GUI windows [skip ci] This was achieved was using a single Qt style sheet per button (see https://stackoverflow.com/questions/37058585/how-can-i-use-a-qt4-id-or-class-selector-in-the-style-sheet-with-traitsui) with the attribute border-image (see https://doc.qt.io/qt-5/stylesheet-examples.html#qpushbutton-and-images) (8 days ago) - commit dd55d89
• Merge branch 'v3.0.0-RC2-dev' into 48_sift2_v3.0.0-RC2 (9 days ago) - commit 868c06b
• [DOC] add docstrings and generate API docs (9 days ago) - commit dc7f831
• ENH: changes related to the addition of the new interface for sift2 in the diffusion workflow (9 days ago) - commit 280cea8
• DOC: update api_doc.rst [skip ci] (9 days ago) - commit 17047b7
• REF: created entrypoint scripts in separate file as it was creating export issues for singularity (fixes #47) (9 days ago) - commit 039d353
• DOC: review toctree depth (10 days ago) - commit bbc3d8d
• DOC: update paths in TOCs in api_doc.rst (10 days ago) - commit e53c897
• FIX: add missing "'" to fix EOL error (10 days ago) - commit e0ab1c5
• DOC: updated api main file (10 days ago) - commit dd2f6be
• DOC: add missing desc for interface input/output (12 days ago) - commit 4dc6739
• DOC: add missing desc for interface input/output (12 days ago) - commit dd7ced7
• DOC: add all missing input/output description for correct doc rendering (12 days ago) - commit 159378b
• DOC: try to correct rendering of some fsl interfaces (12 days ago) - commit 3d55216
• DOC: try to correct rendering of some fsl interfaces (12 days ago) - commit bad9d94
• DOC: added blank lines between nipype inputs and outputs for correct doc rendering (12 days ago) - commit dacb9c2
• DOC: update max_depth of toc in sphinx-apidoc option (12 days ago) - commit e4d55a8
• DOC: updated spninx-apidoc options and add TOC modules (12 days ago) - commit b6d2263
• DOC: review sphinx-apidoc build options (12 days ago) - commit 9ca7fcc
• DEL: remove unused splitBvecVal interface in stages/preprocessing.py (12 days ago) - commit a52f094
• DOC: fix indent in fmripipeline docstring (12 days ago) - commit bd8991d
• DOC: reviewed get icon to return None when READTHEDOCS is detected (12 days ago) - commit ad90c5d
• DEBUG: print icon (12 days ago) - commit b6c7992
• FIX: try with pass (12 days ago) - commit 6623385
• FIX: reviewed exception as it seems to not be handled (12 days ago) - commit 2c0b27f
• FIX: move return in tray/catch of get_icon() in gui.py (12 days ago) - commit 98c6249
• FIX: reviewed way to link image in gui.py to enable building the doc (12 days ago) - commit 163b6f1
• DOC: try the -n sphinx option [skip ci] (13 days ago) - commit bcad2e2
• DOC: update requirements and autodoc_mock_import [skip ci] (13 days ago) - commit d94e084
• DOC: add traitsui to autodoc_mock_imports [skip ci] (13 days ago) - commit 9e6046c
• DOC: add pyface to autodoc_mock_imports [skip ci] (13 days ago) - commit 6a1b3b0
• DOC: add PySide2 to autodoc_mock_imports [skip ci] (13 days ago) - commit e49bc13
• DOC: use PySide2 (13 days ago) - commit 3952764
• DOC: use pyface (13 days ago) - commit 04c553a
• FIX: import traits in cmtklib/diffusion.py (13 days ago) - commit 8d495b6
• DOC: corrected imports and review how to handle dipy [skip ci] (13 days ago) - commit 2d4a33b
• DOC: update versions in requirements.txt [skip ci] (13 days ago) - commit 3f54c27
• GIT: ignore new generated api documentation files (13 days ago) - commit d08edc5
• DOC: review rewuirements.txt and autodoc_mock_imports [skip ci] (13 days ago) - commit 9f26984
• DOC: add pyface to autodoc_mock_imports (13 days ago) - commit 6e49281
• DOC: try an other way to access cmp on path for autodoc (13 days ago) - commit 8164d3d
• DOC: try an other way to access cmp on path for autodoc (13 days ago) - commit 4ac6018
• DOC: try an other way to access cmp on path for autodoc (13 days ago) - commit 6318337
• DOC: fix path to module cmp (13 days ago) - commit cb0f1c0
• DOC: removed numpy from autodoc_mock_imports (13 days ago) - commit 8f1d773
• DOC: add matplotlib in requirements.txt [skip ci] (13 days ago) - commit bf92d18
• DOC: test API doc on readthedocs (13 days ago) - commit 0288ff7
• DOC: add docstrings in cmtklib/bids/utils.py (13 days ago) - commit b04e657
• DOC: add docstrings in cmtklib/interfaces/mrtrix3.py (13 days ago) - commit f5786be
• DOC: corrected typo in docstring example (13 days ago) - commit f4f03fe
• MAINT: add new line at end of files (13 days ago) - commit 3de0ec6
• REF: Move interfaces from misc to cmtklib/diffusion (13 days ago) - commit 36ffd50
• REF: rename class name with capital letter in interfaces/misc.py (13 days ago) - commit 8a4151b
• REF: rename class name with capital letter (13 days ago) - commit 5660794
• REF: Move interfaces from misc to fsl (13 days ago) - commit dc7f344
• DOC: add docstrings to cmtklib/interfaces/misc.py (13 days ago) - commit 04c759d
• DOC: started to add docstring in interfaces/misc.py (2 weeks ago) - commit d356dd0
• DEL: removed unused interface match_orientation (2 weeks ago) - commit 3c4e737
• DEL: remove CMP2 interfaces to MITK (2 weeks ago) - commit fa3f939
• MAINT: update docstring and clean code in cmtklib/interfaces/fsl.py (2 weeks ago) - commit 913111c
• DOC: update docstrings in cmtklib/freesurfer.py (2 weeks ago) - commit 87306a3
• DOC: update docstrings in cmtklib/dipy.py (2 weeks ago) - commit 1ba05e7
• DOC: update docstrings in cmtklib/diffusion_toolkit.py (2 weeks ago) - commit 0448148
• DOC: update docstrings in cmtklib/camino2trackvis.py (2 weeks ago) - commit 59be836
• DOC: update docstrings in cmtklib/camino.py (2 weeks ago) - commit 68e03cb
• DOC: update docstrings in cmtklib/ants.py (2 weeks ago) - commit db5d030
• DOC: update docstrings in cmtklib/afni.py (2 weeks ago) - commit 1d2bd6e
• DOC: add docstrings in cmtklib/parcellation.py (2 weeks ago) - commit 80c7152
• MAINT: add capital letter for classes in cmtklib/functionalMRI.py (2 weeks ago) - commit 2c92437
• DOC: added docstrings in cmtklib/functionalMRI.py (2 weeks ago) - commit 861e30e
• DOC: corrected examples in docstrings of connectome.py (2 weeks ago) - commit 59c869e
• DOC: add docstrings in cmtklib/diffusion.py [skip ci] (2 weeks ago) - commit 3c1b3ca
• DOC: add docstrings in cmtklib/connectome.py [skip ci] (2 weeks ago) - commit 0d63ead
• DOC: add docstring in cmtklib/config.py (2 weeks ago) - commit b0cf724
• MAINT: use capital letter for class BColors (2 weeks ago) - commit 3de621e
• DOC: add docstrings in cmtklib/utils.py (2 weeks ago) - commit 49c3fdc
• DOC: update attributes/param syntax in stages of bidsappmanager [skip ci] (5 weeks ago) - commit 35c25dc
• DOC: update attributes/param syntax in bidsappmanager/core.py [skip ci] (5 weeks ago) - commit 8714b0c
• DOC: update attributes/param syntax in main and pipeline files of bidsappmanager [skip ci] (5 weeks ago) - commit 1160861
• DOC: add module docstring to cmp/viz/reports.py [skip ci] (5 weeks ago) - commit 0c42cb9
• MAINT: removed binaries related to the Diffusion Toolkit (DTK) [skip ci] (5 weeks ago) - commit d9c7c9b
• DOC: add docstrings to cmp/project.py [skip ci] (5 weeks ago) - commit d28fa5d
• DOC: review docstrings in pipelines/common.py [skip ci] (5 weeks ago) - commit a82e1d2
• DOC: add docstring in stages/common.py [skip ci] (5 weeks ago) - commit 83da602
• FIX: correct project_info.subject_session in anatomical.py and review code layout in all pipelines (5 weeks ago) - commit 74fa328
• DOC: add docstrings to segmentation.py [skip ci] (5 weeks ago) - commit 6204f1f
• DOC: add docstrings to registration.py [skip ci] (5 weeks ago) - commit 0e6055e
• DOC: complete docstrings to preprocessing.py [skip ci] (5 weeks ago) - commit 7f1a245
• DOC: add docstrings to parcellation.py [skip ci] (5 weeks ago) - commit 074a88b
• DOC: add create_workflow() as Methods to stage class docstring [skip ci] (5 weeks ago) - commit 23d7aff
• DOC: add create_workflow() as Methods to stage class docstrings [skip ci] (5 weeks ago) - commit e9bacfd
• DOC: modify docstring of constructor [skip ci] (5 weeks ago) - commit 5b823a3
• DOC: add docstrings in preprocessing.py [skip ci] (5 weeks ago) - commit 864bdd3
• DOC: fix typo in connectome.py and fmri_connectome.py [skip ci] (5 weeks ago) - commit a9e9fec
• FIX: reviewed constructors of pipelines (5 weeks ago) - commit d005f71
• DOC: add docstring to frmi_preprocessing.py [skip ci] (5 weeks ago) - commit 3bebb98
• DOC: add docstrings to parcellation.py [skip ci] (5 weeks ago) - commit b2096e8
• DOC: correct typo in docstring of functionalMRI.py [skip ci] (5 weeks ago) - commit 4c09ca0
• MAINT: removed extra parenthesis (6 weeks ago) - commit ef787a8
• DOC: add missing docstrings in constructors (6 weeks ago) - commit 7349b1a
• DOC: Add docstring to functionalMRI.py (6 weeks ago) - commit 0ea81e1
• DOC: added docstrings to connectome and diffusion stages (6 weeks ago) - commit 3714180
• DOC: update doctring modules in cmp.bidsappmanager.pipelines and cmp.bidsappmanager.stages [skip ci] (6 weeks ago) - commit 8b887ce
• DOC: add docstrings in fMRI.py (6 weeks ago) - commit 49719ef
• DOC: add docstring to GLobalConfigurations class [skip ci] (6 weeks ago) - commit b03f47b
• DOC: correct parameter type description in docstring [skip ci] (6 weeks ago) - commit 01ef32c
• DOC: update and missing doctrings [skip ci] (6 weeks ago) - commit df75aa9
• DOC: add empty docstring generated by pycharm (6 weeks ago) - commit ef75d0a
• DOC: reviewed doctrings with info on inheritance (6 weeks ago) - commit 20cc7ca
• DOC: added docstrings and cleaning in gui.py and project.py (cmp.bidsappmanager) (6 weeks ago) - commit 4277d44
• FIX: install cmtklib.bids (7 weeks ago) - commit cb88a97
• DOC: started docstring in cmp.project [skip ci] (7 weeks ago) - commit adcd301
• DOC: add docstring to bidsappmanager.core [skip ci] (7 weeks ago) - commit 04ebd39
• REF: refactored project_info and started docstring in bidsappmanager.gui [skip ci] (7 weeks ago) - commit 453dd2b
• MAINT: renamed classes and replaced CMP_MainWindow by CMP_MainWindowV2 (7 weeks ago) - commit 1bced8d
• MAINT: cleaning for cmpbidsappmanager.project.py [skip ci] (7 weeks ago) - commit 1bddbe5
• DOC: add docstrings to cmpbidsappmanager pipeline and stage files (7 weeks ago) - commit c43f0a8
• FIX: add dc package to be installed inside the container to make BET happy (see #50) (7 weeks ago) - commit 95c26e3
• FIX: removed the extra installation of bc along fsl as it seems to be installed inside the container (see #50) (7 weeks ago) - commit ade8a45
• FIX: dc should be indeed part of bc package that is now install along with FSL to make BET happy (see #50) (7 weeks ago) - commit 5fe1125
• FIX: add dc package to be installed inside the container to make BET happy (see #50) (7 weeks ago) - commit 163bdf8
• DOC: add link to contributing page and add section tile for contribution types (7 weeks ago) - commit cbb4a51
• DOC: update readthedocs config to install cmp (7 weeks ago) - commit 276b355
• DOC: update readthedocs config to install cmp (7 weeks ago) - commit 7989c7c
• DOC: update readthedocs config to install cmp (7 weeks ago) - commit bb5fde5
• DOC: fix typo for warning box (7 weeks ago) - commit 72cec74
• DOC: update readthedocs YAML config file to V2 (7 weeks ago) - commit 7876333
• Git: ignore .idea/ folders (7 weeks ago) - commit 2a64fbf
• DOC: update instructions for contributions (7 weeks ago) - commit 6e42383
• DOC: add warning about tracking system and how to opt-out (7 weeks ago) - commit 7066c3e
• ENH: add a tracking system to report usage system (7 weeks ago) - commit 1f8636d
• VERSION: update to v3.0.0-RC2 (3 months ago) - commit 6f206bd
• FIX: install missing package dependencies (cvxpy and cvxpy-base) of mapmri (3 months ago) - commit 8bdfca6
• MAINT: remove option to normalize dwi to B0 for mrtrix3 csd (3 months ago) - commit 79dbf0f
• MAINT: correct code style issues (3 months ago) - commit 2330e7e
• ENH: add option to specify number of threads in BIDS App interface GUI (3 months ago) - commit 19044e4
• ENH: add option to change output directory of BIDS App Interface GUI (3 months ago) - commit 1a284c0
• FIX: correct conditions for running anat/dwi/func pipelines with coverage (3 months ago) - commit 76b410d
• CI: add test processing anatomical + fmri pipelines (3 months ago) - commit 507e4a7
• FIX: renamed appropriately variable of dipy_recon_config_ui for GUI (3 months ago) - commit 69d50b8
• FIX: convert number_of_threads to string type (3 months ago) - commit da16620
• DOC: update instructions for installation (Python 3) [skip ci] (4 months ago) - commit a12ce93

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git log v3.0.0-beta-RC2..HEAD --pretty=format:' * %s %Cgreen(%cr) - commit %Cred%h%Creset' --abbrev-commit