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Introduction to differential gene expression analysis using RNA-seq

Dündar, Friederike; Skrabanek, Luce; Zumbo, Paul

Comprehensive introduction to the processing and analysis of bulk RNA-seq data including basic information about Illumina-based short read sequencing, common file formats (FASTQ, SAM/BAM, BED, ...) and quality controls. Contains ready-to-use UNIX and R code; covers the most common application of bulk RNA-seq to identify genes that are differentially expressed when comparing two conditions.

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Publication date:
December 23, 2020
DOI:
10.5281/zenodo.4390117

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10.5281/zenodo.4390117

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Keyword(s):
RNA-seq; bioinformatics; differential gene expression
License (for files):
Creative Commons Attribution 4.0 International

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Version 2020-12 10.5281/zenodo.4390117 Dec 23, 2020
Version 2020-05 10.5281/zenodo.3985047 Sep 1, 2015
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