GMOD/Apollo: 2.6.2-RC1
Creators
- Nathan Dunn1
- Colin Diesh
- Deepak2
- S2KFan
- Gregg Helt3
- Robert Buels
- Monica Munoz-Torres4
- Yating Liu
- Helena Rasche
- Anthony Bretaudeau5
- Stephen Ficklin
- Justin Reese1
- luke6
- hsiao yi
- Robert Syme
- Cory Maughmer7
- NehaVC
- childers
- Michael Paulini8
- Tim Stickland9
- Aymeric Naômé
- Kim Rutherford10
- Liam Gretton
- Mikkel Christensen11
- Rasmus Olofzon12
- The Gitter Badger13
- Eric Y14
- Jun-Wei Lin
- rbelnap
- wesleyemason
- 1. Lawrence Berkeley National Lab
- 2. LBNL
- 3. Genomancer
- 4. TISLab, OSU
- 5. BIPAA/GenOuest
- 6. OHSU Computational Biology Department
- 7. @TAMU-CPT
- 8. WormBase
- 9. Wellcome Sanger Institute
- 10. Uni of Cambridge / @PomBase
- 11. EBI
- 12. Lund University, Biomedical Centre
- 13. Gitter
- 14. UC Berkeley
Description
RELEASE CANDIDATE 1 2.6.2-RC1
This is a minor release with bug fixes and feature changes.
Features
- Add option to suppress calculation of non-canonical splice site 2509.
- Added the ability to sync the gene and transcript name with the click of a button 2519.
- Added organism and species to menus 2537.
- Added UUID lookup and link 2539.
- Added status filter for recent annotations 2543.
- Add feature name
loc
to loadLink 2544. loc
loadLink now supports UUID and ID popup provides link 2549.
Bug Fixes
- BLAT search should send annotation creation results to the proper reference sequence 2514.
- Properly handle Shine_Dalgarno sequences when added as part of gene model 2515.
- Now able to resize terminators by dragging 2521.
- Added missing GO annotations 2535.
- findAllOrganism webserver failed when user is not an admin and no session is present 2540.
- Provide minor UI and bug fixes 2548.
Infrastructure Changes
- Upgrade to JBrowse 1.16.10
Full change long for all versions can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md
Docker builds are on quay.io and docker hub:
https://quay.io/repository/gmod/apollo?tab=builds https://hub.docker.com/r/gmod/apollo Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/
Note: You can find a guide upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html
Report issues if found. Active mailing list (apollo@lbl.gov) and google group.
Files
GMOD/Apollo-2.6.2-RC1.zip
Files
(94.2 MB)
Name | Size | Download all |
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md5:274d62591036d5b5a99e2a3d0c260851
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Additional details
Related works
- Is supplement to
- https://github.com/GMOD/Apollo/tree/2.6.2-RC1 (URL)