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Published December 17, 2020 | Version 2.6.2-RC1
Software Open

GMOD/Apollo: 2.6.2-RC1

  • 1. Lawrence Berkeley National Lab
  • 2. LBNL
  • 3. Genomancer
  • 4. TISLab, OSU
  • 5. BIPAA/GenOuest
  • 6. OHSU Computational Biology Department
  • 7. @TAMU-CPT
  • 8. WormBase
  • 9. Wellcome Sanger Institute
  • 10. Uni of Cambridge / @PomBase
  • 11. EBI
  • 12. Lund University, Biomedical Centre
  • 13. Gitter
  • 14. UC Berkeley

Description

RELEASE CANDIDATE 1 2.6.2-RC1

This is a minor release with bug fixes and feature changes.

Features

  • Add option to suppress calculation of non-canonical splice site 2509.
  • Added the ability to sync the gene and transcript name with the click of a button 2519.
  • Added organism and species to menus 2537.
  • Added UUID lookup and link 2539.
  • Added status filter for recent annotations 2543.
  • Add feature name loc to loadLink 2544.
  • loc loadLink now supports UUID and ID popup provides link 2549.

Bug Fixes

  • BLAT search should send annotation creation results to the proper reference sequence 2514.
  • Properly handle Shine_Dalgarno sequences when added as part of gene model 2515.
  • Now able to resize terminators by dragging 2521.
  • Added missing GO annotations 2535.
  • findAllOrganism webserver failed when user is not an admin and no session is present 2540.
  • Provide minor UI and bug fixes 2548.

Infrastructure Changes

Full change long for all versions can be found here: https://github.com/GMOD/Apollo/blob/develop/ChangeLog.md

Docker builds are on quay.io and docker hub:

https://quay.io/repository/gmod/apollo?tab=builds https://hub.docker.com/r/gmod/apollo Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/latest/

Note: You can find a guide upgrading existing Apollo installations here: https://genomearchitect.readthedocs.io/en/latest/Migration.html

Report issues if found. Active mailing list (apollo@lbl.gov) and google group.

Files

GMOD/Apollo-2.6.2-RC1.zip

Files (94.2 MB)

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