10.5281/zenodo.4311477
https://zenodo.org/records/4311477
oai:zenodo.org:4311477
Bar, Ido
Ido
Bar
0000-0002-2004-4233
Griffith University
Sambasivam, Prabhakaran Thanjavur
Prabhakaran Thanjavur
Sambasivam
Griffith University
Davidson, Jenny
Jenny
Davidson
South Australian Research and Development Institute
Farfan-Caceres, Lina M
Lina M
Farfan-Caceres
Curtin University
Lee, Robert C
Robert C
Lee
0000-0002-4174-7042
Curtin University
Hobson, Kristy
Kristy
Hobson
NSWDPI
Moore, Kevin
Kevin
Moore
NSWDPI
Ford, Rebecca
Rebecca
Ford
0000-0002-4192-0706
Griffith University
Dataset and code release for "Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia"
Zenodo
2020
plant pathogen
fungi
Ascochyta
Chickpea
Population genetics
2020-12-08
10.5281/zenodo.4311476
1.0
Creative Commons Attribution 4.0 International
This upload contains the raw DArTseq data and code for reproducible analysis and production of output tables and plots to accompany the publication "Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia".
The analysis is performed primarily in R and is run using the `A_rabiei_DArT.R` file.
A version-controlled repository of this upload is maintained at GitHub at the following link: https://github.com/IdoBar/A_rabiei_DArT
The archived file is structured as follows:
Main analysis code is in A_rabiei_DArT.R
Raw DArTseq data and A. rabiei isolate metadata can be found in in the data folder
Output tables and plots in output folder
General information (partial and slightly outdated) in the markdown A_rabiei_DArT.Rmd and knitted A_rabiei_DArT.html files
Australian chickpea production stats and figures in Chickpea_production.R