Dataset Open Access

BridgeDb: Human and SARS-related corona virus gene/protein mapping database derived from Wikidata

Kutmon, Martina; Willighagen, Egon


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<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd">
  <identifier identifierType="DOI">10.5281/zenodo.4297574</identifier>
  <creators>
    <creator>
      <creatorName>Kutmon, Martina</creatorName>
      <givenName>Martina</givenName>
      <familyName>Kutmon</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7699-8191</nameIdentifier>
      <affiliation>Maastricht University</affiliation>
    </creator>
    <creator>
      <creatorName>Willighagen, Egon</creatorName>
      <givenName>Egon</givenName>
      <familyName>Willighagen</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-7542-0286</nameIdentifier>
      <affiliation>Maastricht University</affiliation>
    </creator>
  </creators>
  <titles>
    <title>BridgeDb: Human and SARS-related corona virus gene/protein mapping database derived from Wikidata</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>BridgeDb</subject>
    <subject>identifier mapping</subject>
    <subject>coronavirus</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-11-30</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4297574</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3735704</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/covid-19</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsPartOf">https://zenodo.org/communities/zenodo</relatedIdentifier>
  </relatedIdentifiers>
  <version>2020-11-30</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Gene/Protein mappings for human and SARS-related coronaviruses. Data is derived from Wikidata. Mappings from Wikidata to NCBI Gene, RefSeq, UniProt, and&amp;nbsp;Guide to Pharmacology Target&amp;nbsp;are provided in the .bridge file.&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;171 Wikidata (Wd) identifiers&lt;/li&gt;
	&lt;li&gt;71 Uniprot-TrEMBL (S) identifiers&lt;/li&gt;
	&lt;li&gt;70 NCBI Gene (L) identifiers&lt;/li&gt;
	&lt;li&gt;58&amp;nbsp;RefSeq (Q) identifiers&lt;/li&gt;
	&lt;li&gt;10&amp;nbsp;Guide to Pharmacology Target&amp;nbsp;(Gpt) identifiers&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;Virus name was added as attribute (&amp;quot;virus&amp;quot;) to Wikidata Xrefs.&lt;/p&gt;</description>
    <description descriptionType="Other">License: Creative Commons CC0</description>
  </descriptions>
</resource>
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