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Overcoming data bottlenecks in pathogen genomic surveillance

Underwood, Anthony; Afolayan, Ayorinde; Shammana, Varun; Gayeta, June; Masim, Melissa Ana; Bernal, Johan F.; Argimon, Silvia; Abrudan, Monica; Carlos, Celia; Sia, Sonia; Kumar, Ravi; Okeke, Iruka; Donado-Godoy, Pilar; Aanensen, David M.


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  <identifier identifierType="DOI">10.5281/zenodo.4292128</identifier>
  <creators>
    <creator>
      <creatorName>Underwood, Anthony</creatorName>
      <givenName>Anthony</givenName>
      <familyName>Underwood</familyName>
      <affiliation>Centre for Genomic Pathogen Surveillance, UK</affiliation>
    </creator>
    <creator>
      <creatorName>Afolayan, Ayorinde</creatorName>
      <givenName>Ayorinde</givenName>
      <familyName>Afolayan</familyName>
      <affiliation>College of Medicine, University of Ibadan</affiliation>
    </creator>
    <creator>
      <creatorName>Shammana, Varun</creatorName>
      <givenName>Varun</givenName>
      <familyName>Shammana</familyName>
      <affiliation>Kempegowda Institute of Medical Sciences (KIMS), India</affiliation>
    </creator>
    <creator>
      <creatorName>Gayeta, June</creatorName>
      <givenName>June</givenName>
      <familyName>Gayeta</familyName>
      <affiliation>Research Institute for Tropical Medicine, Philippines</affiliation>
    </creator>
    <creator>
      <creatorName>Masim, Melissa Ana</creatorName>
      <givenName>Melissa Ana</givenName>
      <familyName>Masim</familyName>
      <affiliation>Research Institute for Tropical Medicine, Philippines</affiliation>
    </creator>
    <creator>
      <creatorName>Bernal, Johan F.</creatorName>
      <givenName>Johan F.</givenName>
      <familyName>Bernal</familyName>
      <affiliation>Agrosavia, Colombia</affiliation>
    </creator>
    <creator>
      <creatorName>Argimon, Silvia</creatorName>
      <givenName>Silvia</givenName>
      <familyName>Argimon</familyName>
      <affiliation>Centre for Genomic Pathogen Surveillance, UK</affiliation>
    </creator>
    <creator>
      <creatorName>Abrudan, Monica</creatorName>
      <givenName>Monica</givenName>
      <familyName>Abrudan</familyName>
      <affiliation>Centre for Genomic Pathogen Surveillance, UK</affiliation>
    </creator>
    <creator>
      <creatorName>Carlos, Celia</creatorName>
      <givenName>Celia</givenName>
      <familyName>Carlos</familyName>
      <affiliation>Research Institute for Tropical Medicine, Philippines</affiliation>
    </creator>
    <creator>
      <creatorName>Sia, Sonia</creatorName>
      <givenName>Sonia</givenName>
      <familyName>Sia</familyName>
      <affiliation>Research Institute for Tropical Medicine, Philippines</affiliation>
    </creator>
    <creator>
      <creatorName>Kumar, Ravi</creatorName>
      <givenName>Ravi</givenName>
      <familyName>Kumar</familyName>
      <affiliation>Kempegowda Institute of Medical Sciences (KIMS), India</affiliation>
    </creator>
    <creator>
      <creatorName>Okeke, Iruka</creatorName>
      <givenName>Iruka</givenName>
      <familyName>Okeke</familyName>
      <affiliation>College of Medicine, University of Ibadan</affiliation>
    </creator>
    <creator>
      <creatorName>Donado-Godoy, Pilar</creatorName>
      <givenName>Pilar</givenName>
      <familyName>Donado-Godoy</familyName>
      <affiliation>Agrosavia, Colombia</affiliation>
    </creator>
    <creator>
      <creatorName>Aanensen, David M.</creatorName>
      <givenName>David M.</givenName>
      <familyName>Aanensen</familyName>
      <affiliation>Centre for Genomic Pathogen Surveillance, UK</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Overcoming data bottlenecks in pathogen genomic surveillance</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>Antimicrobial Resistance</subject>
    <subject>Whole genome sequencing</subject>
    <subject>Bioinformatics</subject>
    <subject>Training</subject>
    <subject>Pathogen</subject>
    <subject>Bacteria</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-11-26</date>
  </dates>
  <resourceType resourceTypeGeneral="InteractiveResource"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4292128</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.4292127</relatedIdentifier>
  </relatedIdentifiers>
  <version>1</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/restrictedAccess">Restricted Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Training materials associated with the&amp;nbsp;&lt;a href="https://ghru.pathogensurveillance.net/"&gt;NIHR Global Health Research Unit&lt;/a&gt;, Genomic Surveillance of Antimicrobial Resistance and published in the paper &amp;quot;Overcoming data bottlenecks in pathogen genomic surveillance&amp;quot;. Clinical Infectious Diseases&lt;/p&gt;</description>
    <description descriptionType="Other">This work was funded by the National Institute for Health Research (NIHR) Global Health Research Unit for the Surveillance of Antimicrobial Resistance (Grant Reference Number 16/136/111)</description>
  </descriptions>
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