Journal article Open Access

ANN: A platform to annotate text with Wikidata IDs

Lubiana, Tiago; Weber, Sabine; Andrade Paranhos, Bruno; Araújo, Dayane; Dorrego-Rivas, Ana; Franzen, Delwen; Nogueira Viçosa, Gabriela; Ghosh, Arup; Hojas García-Plaza, Inés


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  <identifier identifierType="DOI">10.5281/zenodo.4279611</identifier>
  <creators>
    <creator>
      <creatorName>Lubiana, Tiago</creatorName>
      <givenName>Tiago</givenName>
      <familyName>Lubiana</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-2473-2313</nameIdentifier>
      <affiliation>Department of Clinical and Toxicological Analyses, School of Pharmaceutical Sciences, University of São Paulo, São Paulo, Brazil</affiliation>
    </creator>
    <creator>
      <creatorName>Weber, Sabine</creatorName>
      <givenName>Sabine</givenName>
      <familyName>Weber</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-5577-3356</nameIdentifier>
      <affiliation>ILCC, University of Edinburgh, UK</affiliation>
    </creator>
    <creator>
      <creatorName>Andrade Paranhos, Bruno</creatorName>
      <givenName>Bruno</givenName>
      <familyName>Andrade Paranhos</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-6730-6608</nameIdentifier>
      <affiliation>Cellular and Molecular Cardiology Laboratory, Biophysics Institute, Federal University of Rio de Janeiro, Brazil</affiliation>
    </creator>
    <creator>
      <creatorName>Araújo, Dayane</creatorName>
      <givenName>Dayane</givenName>
      <familyName>Araújo</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-2211-0107</nameIdentifier>
      <affiliation>European Molecular Biology Laboratory - European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK</affiliation>
    </creator>
    <creator>
      <creatorName>Dorrego-Rivas, Ana</creatorName>
      <givenName>Ana</givenName>
      <familyName>Dorrego-Rivas</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-0462-2988</nameIdentifier>
      <affiliation>Planar Polarity and Plasticity lab, University of Bordeaux, INSERM, Neurocentre Magendie, U1215, F-3300 Bordeaux, France</affiliation>
    </creator>
    <creator>
      <creatorName>Franzen, Delwen</creatorName>
      <givenName>Delwen</givenName>
      <familyName>Franzen</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-9974-9115</nameIdentifier>
      <affiliation>QUEST Center for Transforming Biomedical Research, Berlin Institute of Health (BIH), Berlin, Germany, Charite ́- Universitätsmedizin Berlin, Berlin, Germany</affiliation>
    </creator>
    <creator>
      <creatorName>Nogueira Viçosa, Gabriela</creatorName>
      <givenName>Gabriela</givenName>
      <familyName>Nogueira Viçosa</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-0263-3699</nameIdentifier>
      <affiliation>None</affiliation>
    </creator>
    <creator>
      <creatorName>Ghosh, Arup</creatorName>
      <givenName>Arup</givenName>
      <familyName>Ghosh</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-3259-0124</nameIdentifier>
      <affiliation>Immunogenomics &amp; Systems Biology Lab, Institute of Life Sciences, Bhubaneswar</affiliation>
    </creator>
    <creator>
      <creatorName>Hojas García-Plaza,  Inés</creatorName>
      <givenName>Inés</givenName>
      <familyName>Hojas García-Plaza</familyName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-8930-8268</nameIdentifier>
      <affiliation>Department of Molecular Neurobiology, Max Planck Institute of Experimental Medicine, 37075 Göttingen, Germany</affiliation>
    </creator>
  </creators>
  <titles>
    <title>ANN: A platform to annotate text with Wikidata IDs</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>annotation</subject>
    <subject>Wikidata</subject>
    <subject>semantic web</subject>
    <subject>biocuration</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-11-18</date>
  </dates>
  <language>en</language>
  <resourceType resourceTypeGeneral="Text">Journal article</resourceType>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4279611</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.4279610</relatedIdentifier>
  </relatedIdentifiers>
  <version>1</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Report of the work done by the Ann team at the&lt;a href="https://sprint.elifesciences.org/"&gt; eLife Sprint&lt;/a&gt;&amp;nbsp;2020.&amp;nbsp;&lt;br&gt;
It describes the effort pursued towards a system for&amp;nbsp;universal annotation of biomedical articles using the collaborative knowledge graph of Wikidata.&amp;nbsp;&amp;nbsp;&lt;/p&gt;

&lt;p&gt;The project is currently active at&amp;nbsp;&lt;a href="https://github.com/lubianat/ann"&gt;https://github.com/lubianat/ann&lt;/a&gt;.&amp;nbsp;&lt;/p&gt;</description>
  </descriptions>
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