November 10, 2020 Preprint Open Access

Roderic D. M. Page

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    "description": "<p>This paper describes an interactive web application to display DNA barcode data. It supports both query by sequence and query by geographic area. By using n-gram indexing of DNA sequences, and alignment-free phylogeny construction, the user can interactively explore DNA barcode data in real time.</p>", 
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    "references": [
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      "Simonsen M, Mailund T, Pedersen CNS. 2008. Rapid Neighbour-Joining. In: Crandall KA, Lagergren J eds. Algorithms in Bioinformatics. Lecture Notes in Computer Science. Berlin, Heidelberg: Springer, 113\u2013122. DOI: 10.1007/978-3-540-87361-7_10.", 
      "Stoeckle MY, Coffran C. 2013. TreeParser-Aided Klee Diagrams Display Taxonomic Clusters in DNA Barcode and Nuclear Gene Datasets. Scientific Reports 3:1\u20136. DOI: 10.1038/srep02635.", 
      "Wieczorek J, Bloom D, Guralnick R, Blum S, D\u00f6ring M, Giovanni R, Robertson T, Vieglais D. 2012. Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. PLoS ONE 7:e29715. DOI: 10.1371/journal.pone.0029715.", 
      "Yang K, Zhang L. 2008. Performance comparison between k -tuple distance and four model-based distances in phylogenetic tree reconstruction. Nucleic Acids Research 36:e33\u2013e33. DOI: 10.1093/nar/gkn075."
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    "keywords": [
      "DNA barcoding", 
      "visualisation", 
      "k-mer", 
      "elasticsearch", 
      "phylogeny"
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    "publication_date": "2020-11-10", 
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        "orcid": "0000-0002-7101-9767", 
        "affiliation": "IBAHCM, MVLS, University of Glasgow", 
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