November 10, 2020 Preprint Open Access

Roderic D. M. Page

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  <identifier identifierType="DOI">10.5281/zenodo.4266482</identifier>
  <creators>
    <creator>
      <creatorName>Roderic D. M. Page</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-7101-9767</nameIdentifier>
      <affiliation>IBAHCM, MVLS, University of Glasgow</affiliation>
    </creator>
  </creators>
  <titles>
    <title>An interactive DNA barcode browser</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>DNA barcoding</subject>
    <subject>visualisation</subject>
    <subject>k-mer</subject>
    <subject>elasticsearch</subject>
    <subject>phylogeny</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-11-10</date>
  </dates>
  <resourceType resourceTypeGeneral="Text">Preprint</resourceType>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4266482</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="Documents" resourceTypeGeneral="Software">https://dna-barcode-browser.herokuapp.com</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="Documents" resourceTypeGeneral="Software">https://github.com/rdmpage/dna-barcode-browser</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.4266481</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
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  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This paper describes an interactive web application to display DNA barcode data. It supports both query by sequence and query by geographic area. By using n-gram indexing of DNA sequences, and alignment-free phylogeny construction, the user can interactively explore DNA barcode data in real time.&lt;/p&gt;</description>
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