10.5281/zenodo.4147100
https://zenodo.org/records/4147100
oai:zenodo.org:4147100
Snelling, Warren M
Warren M
Snelling
0000-0001-6282-9728
USDA-ARS-USMARC
Hoff, Jesse L
Jesse L
Hoff
Gencove, Inc
Li, Jeremiah H
Jeremiah H
Li
Gencove, Inc
Kuehn, Larry A
Larry A
Kuehn
USDA-ARS-USMARC
Keel, Brittney N
Brittney N
Keel
USDA-ARS-USMARC
Lindholm-Perry, Amanda K
Amanda K
Lindholm-Perry
USDA-ARS-USMARC
Pickrell, Joseph K
Joseph K
Pickrell
Gencove, Inc
Data from: Assessment of imputation from low-pass sequencing to predict merit of beef steers
Zenodo
2020
sequence
imputation
genomic prediction
beef cattle
2020-09-28
10.5281/zenodo.4057083
Creative Commons Zero v1.0 Universal
Sup1.tsv: Tab separated text list of animals in imputation reference, containing ID, SRR Accessions, Source, Breed and number of downsampled progeny examined in this study.
Sup2.vcf.gz: VCF-formatted text containing snpEff annotation of variants imputed from low-pass sequence.
Sup3.tsv: Tab separated text summarizing number of variants, low-confidence variants and variant spacing in 1 Mb intervals.
Sup4.tsv: Tab separated text with correlations between molecular breeding values with SNP effects applied to genotypes imputed from low-pass sequence or SNP arrays.
steerworkflow.pdf: Diagram depicting processes to obtain imputed genotypes, (G)EBV and MBV of the study steers