April 9, 2020 Dataset Open Access

Nardus Mollentze; Daniel G. Streicker; Pablo R. Murcia; Katie Hampson; Roman Biek

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  <identifier identifierType="DOI">10.5281/zenodo.4134801</identifier>
  <creators>
    <creator>
      <creatorName>Nardus Mollentze</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-2452-6416</nameIdentifier>
      <affiliation>MRC-University of Glasgow Centre for Virus Research</affiliation>
    </creator>
    <creator>
      <creatorName>Daniel G. Streicker</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-7475-2705</nameIdentifier>
      <affiliation>MRC-University of Glasgow Centre for Virus Research</affiliation>
    </creator>
    <creator>
      <creatorName>Pablo R. Murcia</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-4352-394X</nameIdentifier>
      <affiliation>MRC-University of Glasgow Centre for Virus Research</affiliation>
    </creator>
    <creator>
      <creatorName>Katie Hampson</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-5392-6884</nameIdentifier>
      <affiliation>University of Glasgow</affiliation>
    </creator>
    <creator>
      <creatorName>Roman Biek</creatorName>
      <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0003-3471-5357</nameIdentifier>
      <affiliation>University of Glasgow</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Virulence mismatches in index hosts shape the outcomes of cross-species transmission</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2020</publicationYear>
  <subjects>
    <subject>rabies</subject>
    <subject>cross species transmission</subject>
    <subject>experimental infection</subject>
    <subject>incubation period</subject>
    <subject>clinical period</subject>
    <subject>serial interval</subject>
    <subject>epidemiological parameter</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2020-04-09</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/4134801</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsSupplementTo" resourceTypeGeneral="JournalArticle">10.1073/pnas.2006778117</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.3746609</relatedIdentifier>
  </relatedIdentifiers>
  <version>2.1</version>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Supplemental data and code for the paper &lt;em&gt;Virulence mismatches in index hosts shape the outcomes of cross-species transmission&lt;/em&gt;.&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Dataset 1 is an R Shiny app allowing the estimation of rabies disease progression parameters for all observed combinations of virus source (reservoir) and recipient species, including within-species inoculations.&lt;/li&gt;
	&lt;li&gt;Dataset 2 contains the original data and the analysis code used in this study.&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;See the README files in each dataset folder for further information and usage instructions.&lt;/p&gt;</description>
    <description descriptionType="Other">Changelog - v1.0: initial upload for peer review | v2.0: minor code changes, added documentation and data references, improved reproducibility</description>
  </descriptions>
  <fundingReferences>
    <fundingReference>
      <funderName>Wellcome Trust</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100004440</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/WT/Immunology+and+Infectious+Disease/102507/">102507</awardNumber>
      <awardTitle>Managing viral emergence at the interface of bats and livestock</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>Research Councils UK</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/501100000690</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/RCUK/MRC/MC_UU_12014%2F9/">MC_UU_12014/9</awardNumber>
      <awardTitle>Respiratory infections</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>Wellcome Trust</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100004440</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/WT/Population+and+Public+Health/207569/">207569</awardNumber>
      <awardTitle>The Science of Rabies Elimination</awardTitle>
    </fundingReference>
    <fundingReference>
      <funderName>Wellcome Trust</funderName>
      <funderIdentifier funderIdentifierType="Crossref Funder ID">10.13039/100004440</funderIdentifier>
      <awardNumber awardURI="info:eu-repo/grantAgreement/WT/Immunology+and+Infectious+Disease/095787/">095787</awardNumber>
      <awardTitle>Hierarchical epidemiology: the spread and persistence of infectious diseases in complex landscapes.</awardTitle>
    </fundingReference>
  </fundingReferences>
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