Software Open Access

AIRR Standards

Chan Bukhari, Syed Ahmad; Busse, Christian E.; Christley, Scott; Corrie, Brian D.; Vander Heiden, Jason A.; Kleinstein, Steven H.; Laserson, Uri; Matsen, Frederick A 4th; Rubelt, Florian

Overview

  • Improvements to the organization and wording of various documentation pages.
  • Added missing deprecation tags for rearrangement_id in the Alignment schema.
  • Modified merge_rearrangement in the airr python library so that it can handle a large number of files.
  • Improved validation error handling in the airr python library.

Full Release Notes:

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airr-community/airr-standards-v1.3.1.zip
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  • Rubelt F et al. Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data. Nat Immunol 18:1274 (2017)

  • Breden F et al. Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data. Front Immunol 8:1418 (2017)

  • Vander Heiden JA et al. AIRR Community Standardized Representations for Annotated Immune Repertoires. Front Immunol 9:2206 (2018)

  • Christley S et al. The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons. Front Big Data 3:22 (2020)

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Publication date:
October 13, 2020
DOI:
10.5281/zenodo.4086106

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Grants:
European Commission:
  • iReceptor Plus - ARCHITECTURE AND TOOLS FOR THE QUERY OF ANTIBODY AND T-CELL RECEPTOR SEQUENCING DATA REPOSITORIES FOR ENABLING IMPROVED PERSONALIZED MEDICINE AND IMMUNOTHERAPY (825821)
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License (for files):
Creative Commons Attribution 4.0 International

Versions

Version v1.3.1 10.5281/zenodo.4086106 Oct 13, 2020
Version v1.3.0 10.5281/zenodo.3872265 Jun 1, 2020
Version v1.3.0 10.5281/zenodo.3872174 Jun 1, 2020
Version v1.2.1 10.5281/zenodo.1447139 Oct 5, 2018
Version v1.1.0 10.5281/zenodo.1240501 May 3, 2018
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