[ { "@id" : "_:genid1", "@type" : [ "http://www.w3.org/2002/07/owl#Axiom" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "In theory, only a Positive Outcome can have Dysplasia." } ], "http://www.w3.org/2002/07/owl#annotatedProperty" : [ { "@id" : "http://www.w3.org/2000/01/rdf-schema#domain" } ], "http://www.w3.org/2002/07/owl#annotatedSource" : [ { "@id" : "https://w3id.org/examode/ontology#hasDysplasia" } ], "http://www.w3.org/2002/07/owl#annotatedTarget" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ] }, { "@id" : "_:genid2", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2002/07/owl#oneOf" : [ { "@list" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C46109" }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C46110" } ] } ] }, { "@id" : "http://dbpedia.org/page/Radboud_University_Nijmegen", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://xmlns.com/foaf/0.1/organization" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Radboud University Nijmegen (abbreviated as RU, Dutch: Radboud Universiteit Nijmegen, formerly Katholieke Universiteit Nijmegen) is a public university with a strong focus on research located in Nijmegen, the Netherlands. It was established on 17 October 1923 and is situated in the oldest city of the Netherlands. The RU has seven faculties and enrolls over 19,900 students. It was internationally ranked 156th by the QS World University Rankings." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Radboud Universiteit Nijmegen" }, { "@language" : "nl", "@value" : "Radboud Universiteit Nijmegen" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ] }, { "@id" : "http://linkedlifedata.com/resource/umls/id/C0521191", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#DiseaseAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "PRE-CANCEROUS DYSPLASIA, SUSP.FOR MALIGNANCY" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Displasia pre-cancerosa" }, { "@language" : "en", "@value" : "Pre-Cancerous Dysplasia" }, { "@language" : "nl", "@value" : "Pre-kanker dysplasie" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M74009" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0521191" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4086" } ] }, { "@id" : "http://purl.obolibrary.org/obo/CL_0000094", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#CeliacDiseaseAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "polymorphonuclear leukocyte; granular leucocyte; granular leukocyte" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A leukocyte with abundant granules in the cytoplasm." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "granulociti" }, { "@language" : "en", "@value" : "granulocyte" }, { "@language" : "nl", "@value" : "granulocyte" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "“infiltrato” + “granulociti”/“granulocitario\"" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "http://purl.obolibrary.org/obo/CL_0000542", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#CeliacDiseaseAnnotation" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Linfocita" }, { "@language" : "nl", "@value" : "lymfocyt" }, { "@language" : "en", "@value" : "lymphocyte" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "“infiltrato” + “linfociti”/“linfocitario\"" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "http://purl.obolibrary.org/obo/DOID_3908", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "NSCLC; Non-small cell lung cancer; non-small cell lung carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A lung carcinoma that is characterized as any type of epithelial lung cancer other than small cell lung carcinoma." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "carcinoma polmonare non a piccole cellule" }, { "@language" : "en", "@value" : "lung non-small cell carcinoma" }, { "@language" : "nl", "@value" : "niet-kleincellig longcarcinoom" } ], "http://www.w3.org/2002/07/owl#sameAs" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005233" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007131" } ] }, { "@id" : "http://purl.obolibrary.org/obo/FMA_7397", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Right upper lobar bronchus; Right upper lobe bronchus" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Bronco lobare superiore destro" }, { "@language" : "nl", "@value" : "Rechter superieure lobaire bronchus" }, { "@language" : "en", "@value" : "Right superior lobar bronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C32998" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0225610" } ] }, { "@id" : "http://purl.obolibrary.org/obo/FMA_7404", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Bronchus of right lower lobe; Right lower lobe bronchus; Right lower lobar bronchus." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Bronco lobare inferiore destro" }, { "@language" : "nl", "@value" : "Rechter inferieure lobaire bronchus" }, { "@language" : "en", "@value" : "Right inferior lobar bronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C32998" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0225621" } ] }, { "@id" : "http://purl.obolibrary.org/obo/FMA_7423", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Left upper lobar bronchus; Bronchus of left upper lobe; Left upper lobe bronchus" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Bronco lobare superiore sinistro" }, { "@language" : "en", "@value" : "Left superior lobar bronchus" }, { "@language" : "nl", "@value" : "Linker superieure lobaire bronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C32998" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0225632" } ] }, { "@id" : "http://purl.obolibrary.org/obo/FMA_7432", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Bronchus of left lower lobe; Left lower lobe bronchus; Left lower lobar bronchus" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Bronco lobare inferiore sinistro" }, { "@language" : "en", "@value" : "Left inferior lobar bronchus" }, { "@language" : "nl", "@value" : "Links inferieure lobaire bronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C32998" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0225641" } ] }, { "@id" : "http://purl.obolibrary.org/obo/GO_0070265", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#LungAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym" : [ { "@value" : "necrosis" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "cellular necrosis; necrotic cell death" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Note that the word necrosis has been widely used in earlier literature to describe forms of cell death which are now known by more precise terms, such as apoptosis. Necrosis can occur in a regulated fashion, involving a precise sequence of signals." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "necrose" }, { "@language" : "it", "@value" : "necrosi" }, { "@language" : "en", "@value" : "necrosis" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A type of cell death that is morphologically characterized by an increasingly translucent cytoplasm, swelling of organelles, minor ultrastructural modifications of the nucleus (specifically, dilatation of the nuclear membrane and condensation of chromatin into small, irregular, circumscribed patches) and increased cell volume (oncosis), culminating in the disruption of the plasma membrane and subsequent loss of intracellular contents. Necrotic cells do not fragment into discrete corpses as their apoptotic counterparts do. Moreover, their nuclei remain intact and can aggregate and accumulate in necrotic tissues." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0027540" } ] }, { "@id" : "http://purl.obolibrary.org/obo/IDOMAL_0000603", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "A person under health care. The person may be waiting for this care or may be receiving it or may have already received it." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Patient" }, { "@language" : "it", "@value" : "Paziente" }, { "@language" : "nl", "@value" : "geduldig" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0000001", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "disease; disease or disorder; disease or disorder, non-neoplastic; other disease; diseases; condition; disorder; disorders; medical condition; diseases and disorders" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Disease or Disorder" }, { "@language" : "it", "@value" : "Malattia o disturbo" }, { "@language" : "nl", "@value" : "Ziekte of aandoening" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0000751", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "polyp of the cervix uteri; adenomatous polyp of the uterine cervix; uterine cervix polyp; cervical polyp; adenomatous polyp of cervix; uterine cervix adenomatous polyp; adenomatous polyp of uterine cervix; cervix uteri polyp; polyp of cervix; polyp of the uterine cervix; cervix adenomatous polyp; cervix polyp; polyp of cervix uteri; polyp of uterine cervix; cervix uteri adenomatous polyp; polyp of the cervix; adenomatous polyp of the cervix" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "cervical polyp" }, { "@language" : "nl", "@value" : "cervicale poliep" }, { "@language" : "it", "@value" : "polipo cervicale" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A polyp that arises from the surface of the cervix." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M768003" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007855" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://www.ebi.ac.uk/ols/ontologies/doid/Disease" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "colonic carcinoma; carcinoma of colon; colon carcinoma; colon cancer; carcinoma of the colon" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A carcinoma that arises from epithelial cells of the colon [database_cross_reference: MONDO:DesignPattern]" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "carcinoma del colon" }, { "@language" : "en", "@value" : "colon carcinoma" }, { "@language" : "nl", "@value" : "coloncarcinoom" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0699790" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002052", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "inflammation of lymph node; acute adenitis; chronic lymphadenitis; lymphadenitis; Inflammation of lymph node; acute lymphadenitis; adenitis; lymph node inflammation; chronic adenitis; lymph nodeitis" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "lymph gland infection" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Linfoadenite" }, { "@language" : "nl", "@value" : "Lymfadenitis" }, { "@language" : "en", "@value" : "Lymphadenitis" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Acute or chronic inflammation of one or more lymph nodes. It is usually caused by an infectious process." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M400000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0024205" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002271", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "colonic adenocarcinoma; adenocarcinoma of the colon; colon adenocarcinoma; adenocarcinoma of colon; adenocarcinoma - colon" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "COAD" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Adenocarcinoma del colon" }, { "@language" : "en", "@value" : "Colon Adenocarcinoma" }, { "@language" : "nl", "@value" : "Colon adenocarcinoom" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A carcinoma that arises from glandular epithelial cells of the colon." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0338106" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://www.ebi.ac.uk/ols/ontologies/doid/Disease" ], "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym" : [ { "@value" : "cervical neoplasm; tumor of the cervix uteri; uterine cervical neoplasm" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "malignant tumor of uterine cervix; uterine cervix cancer; malignant neoplasm of cervix; malignant neoplasm of uterine cervix; malignant tumor of the uterine cervix; malignant tumor of cervix uteri; malignant cervical neoplasm; cervix cancer; malignant neoplasm of cervix uteri; neoplasm of uterine cervix; malignant neoplasm of the uterine cervix; malignant cervix uteri neoplasm; malignant uterine cervix neoplasm; malignant tumor of cervix; malignant cervix neoplasm; malignant tumor of the cervix uteri; malignant neoplasm of the cervix uteri; malignant cervix uteri tumor; malignant cervix tumor; malignant uterine cervix tumor; cancer of uterine cervix; cervix uteri cancer; malignant cervical tumor; malignant tumor of the cervix; malignant neoplasm of the cervix" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A primary or metastatic malignant neoplasm involving the cervix." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "baarmoederhalskanker" }, { "@language" : "it", "@value" : "cancro cervicale" }, { "@language" : "en", "@value" : "cervical cancer" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007847" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0003050", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "lung large cell carcinoma; large cell lung carcinoma; large cell lung cancer; large cell undifferentiated lung carcinoma; large cell carcinoma of the lung; large cell carcinoma of lung; anaplastic lung carcinoma" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "LCLC" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "lung large cell carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005233" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A poorly differentiated non-small cell lung carcinoma composed of large polygonal cells without evidence of glandular or squamous differentiation. There is a male predilection." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M801090" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0345958" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0004627", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "duodenitis; duodenum inflammation; inflammation of duodenum" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "hemorrhagic duodenitis" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A form of inflammation" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Duodenite" }, { "@language" : "en", "@value" : "Duodenitis" }, { "@language" : "nl", "@value" : "Duodenitis" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "flogosi" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Acute or chronic inflammation of the duodenum. Causes include bacterial and viral infections and gastroesophageal reflux disease. Symptoms include vomiting and abdominal pain." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M40000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0013298" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0004693", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "squamous carcinoma in situ; cervical intraepithelial neoplasia grade III with severe dysplasia; stage 0 uterine cervix carcinoma; severe dysplasia of the cervix uteri; stage 0 squamous cell carcinoma; CIN III - carcinoma in situ of cervix; squamous cell carcinoma in-situ; epidermoid cell carcinoma in situ; CIN III - severe dyskaryosis; grade III SIN; carcinoma in situ of uterine cervix; carcinoma, squamous cell, in situ, malignant; grade 3 SIN; uterine cervix in situ carcinoma; squamous intraepithelial neoplasia, grade III; carcinoma in situ of cervix; CIN III; intraepithelial squamous cell carcinoma; grade 3 squamous intraepithelial neoplasia; squamous cell carcinoma in situ; epidermoid carcinoma in situ; grade III squamous intraepithelial neoplasia; severe dysplasia of cervix; cervix Ca in situ" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@language" : "en", "@value" : "squamous carcinoma in situ" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "CIN III" }, { "@language" : "nl", "@value" : "Cervicale squameuze intra-epitheliale neoplasie graad 3" }, { "@language" : "it", "@value" : "Neoplasia cervicale squamosa intraepiteliale di grado 3" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006137" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A malignant epithelial neoplasm confined to the squamous epithelium, without invasion of the underlying tissues." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M74008*" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0334245" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005061", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "lung adenocarcinoma; bronchogenic lung adenocarcinoma; nonsmall cell adenocarcinoma; non-small cell lung adenocarcinoma; adenocarcinoma of the lung; adenocarcinoma of lung" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "lung adenocarcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005233" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A carcinoma that arises from the lung and is characterized by the presence of malignant glandular epithelial cells. There is a male predilection with a male to female ratio of 2:1. Usually lung adenocarcinoma is asymptomatic and is identified through screening studies or as an incidental radiologic finding. If clinical symptoms are present they include shortness of breath, cough, hemoptysis, chest pain, and fever. Tobacco smoke is a known risk factor." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M814030" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0152013" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://www.ebi.ac.uk/ols/ontologies/doid/Disease" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "coeliac disease; non tropical sprue; idiopathic steatorrhea; gluten-induced enteropathy; celiac sprue" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An autoimmune genetic disorder with an unknown pattern of inheritance that primarily affects the digestive tract. It is caused by intolerance to dietary gluten. Consumption of gluten protein triggers an immune response which damages small intestinal villi and prevents adequate absorption of nutrients. Clinical signs include abdominal cramping, diarrhea or constipation and weight loss. If untreated, the clinical course may progress to malnutrition, anemia, osteoporosis and an increased risk of intestinal malignancies. However, the prognosis is favorable with successful avoidance of gluten in the diet." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "celiac disease" }, { "@language" : "it", "@value" : "celiachia" }, { "@language" : "nl", "@value" : "coeliakie" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007570" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005131", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym" : [ { "@value" : "cervix cancer; cervical cancer, NOS; cervical cancer; cancer of cervix; uterine cervix cancer" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "cancer of the uterine cervix; carcinoma of the cervix; carcinoma of cervix; carcinoma of the cervix uteri; carcinoma cervix uteri; cancer of uterine cervix; cervical carcinoma; carcinoma of uterine cervix; cervix carcinoma; uterine cervix carcinoma; carcinoma of cervix uteri; cancer of the cervix; cervix uteri carcinoma; carcinoma of the uterine cervix; cancer of cervix" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "carcinoma cervicale" }, { "@language" : "nl", "@value" : "cervicaal carcinoom" }, { "@language" : "en", "@value" : "cervical carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A carcinoma arising from either the exocervical squamous epithelium or the endocervical glandular epithelium. The major histologic types of cervical carcinoma are: squamous carcinoma, adenocarcinoma, adenosquamous carcinoma, adenoid cystic carcinoma and undifferentiated carcinoma." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0302592" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005138", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym" : [ { "@value" : "cancer of lung; cancer of the lung; lung cancer; lung cancer, NOS" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "lung carcinoma; carcinoma of lung; carcinoma of the lung" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "carcinoma polmonare" }, { "@language" : "nl", "@value" : "longcarcinoom" }, { "@language" : "en", "@value" : "lung carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A carcinoma that arises from epithelial cells of the lung" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M801030" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0684249" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005153", "@type" : [ "http://www.w3.org/2002/07/owl#Class", "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "adenocarcinoma of the uterine cervix; uterine cervix adenocarcinoma; adenocarcinoma of cervix; adenocarcinoma of cervix uteri; adenocarcinoma - cervix; cervix adenocarcinoma; adenocarcinoma of the cervix; adenocarcinoma of the cervix uteri; adenocarcinoma cervix uteri; adenocarcinoma of uterine cervix; cervix uteri adenocarcinoma; cervical adenocarcinoma" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "cervical adenocarcinoma, NOS; cervical adenocarcinoma, not otherwise specified" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An adenocarcinoma arising from the cervical epithelium. It accounts for approximately 15% of invasive cervical carcinomas. Increased numbers of sexual partners and human papillomavirus (HPV) infection are risk factors. Grossly, advanced cervical adenocarcinoma may present as an exophytic mass, an ulcerated lesion, or diffuse cervical enlargement. Microscopically, the majority of cervical adenocarcinomas are of the endocervical (mucinous) type." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "adenocarcinoma cervicale" }, { "@language" : "nl", "@value" : "cervicaal adenocarcinoom" }, { "@language" : "en", "@value" : "cervical adenocarcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005131" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005161", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#CervixAnnotation" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A cervix disease may present or not the human papilloma virus." }, { "@value" : "An infectious process caused by a human papillomavirus. This infection can cause abnormal tissue growth." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Humaan papillomavirus-infectie" }, { "@language" : "en", "@value" : "Human Papilloma Virus Infection" }, { "@language" : "it", "@value" : "Infezione da papillomavirus umano" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#annotatedRule" : [ { "@value" : "presence of code D0445** in field 'Diagnosi'" } ], "https://w3id.org/examode/ontology#hasOntobeeAnnotation" : [ { "@value" : "Human papilloma Virus infection; Human papillomavirus disease or disorder; Human Papillomavirus infection; Human papillomavirus infectious disease; Human papillomavirus caused disease or disorder" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "D0445**" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0343641" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005233", "@type" : [ "http://www.w3.org/2002/07/owl#Class", "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "NSCLC - non-small cell lung cancer; non-small cell lung carcinoma; non-small cell carcinoma of lung; non-small cell carcinoma of the lung; non-small cell cancer of lung; non-small cell lung cancer; non-small cell cancer of the lung; NSCLC" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "non-small cell lung cancer, NOS; non small cell lung cancer NOS" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A group of at least three distinct histological types of lung cancer, including non-small cell squamous cell carcinoma, adenocarcinoma, and large cell carcinoma. Non-small cell lung carcinomas have a poor response to conventional chemotherapy." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "carcinoma polmonare non a piccole cellule" }, { "@language" : "nl", "@value" : "niet-kleincellig longcarcinoom" }, { "@language" : "en", "@value" : "non-small cell lung carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005138" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M807030" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007131" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005292", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Lymphadenitis; colitis; colon inflammation; inflammation of colon" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Colite" }, { "@language" : "en", "@value" : "Colitis" }, { "@language" : "nl", "@value" : "Colitis" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Inflammation of the colon." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M40000" }, { "@value" : "M40070" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@value" : "C0009319" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006137", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@language" : "en", "@value" : "cervical intraepithelial neoplasia grade 2/3; high grade dysplasia; moderate or severe dysplasia" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "CIN 2/3" }, { "@language" : "nl", "@value" : "cervicale intra-epitheliale neoplasie graad 2/3" }, { "@language" : "it", "@value" : "neoplasia intraepiteliale cervicale di grado 2/3" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0022394" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A neoplastic process in the cervix characterized by morphologic features of both moderate and severe intraepithelial neoplasia." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C2986622" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006143", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "squamous cervical cancer; cervical squamous cell cancer; squamous cell carcinoma of cervix uteri; squamous cell carcinoma of cervix; squamous cell carcinoma of the uterine cervix; cervix uteri squamous cell carcinoma; uterine cervix squamous cell carcinoma; cervical squamous cell carcinoma; cervix squamous cell carcinoma; squamous cell carcinoma of the cervix uteri; squamous cell carcinoma of the cervix; squamous cell carcinoma of uterine cervix\nhas_related_synonym: cervical squamous cell carcinoma, NOS; CESC; cervical squamous cell carcinoma, not otherwise specified" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "invasive" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Carcinoma a cellule squamose cervicali" }, { "@language" : "nl", "@value" : "Cervicaal plaveiselcelcarcinoom" }, { "@language" : "en", "@value" : "Cervical Squamous Cell Carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005131" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A squamous cell carcinoma arising from the cervical epithelium. It usually evolves from a precancerous cervical lesion. Increased numbers of sexual partners and human papillomavirus (HPV) infection are risk factors for cervical squamous cell carcinoma. The following histologic patterns have been described: conventional squamous cell carcinoma, papillary squamous cell carcinoma, transitional cell carcinoma, lymphoepithelioma-like carcinoma, verrucous carcinoma, condylomatous carcinoma and spindle cell carcinoma. Survival is most closely related to the stage of disease at the time of diagnosis." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M80703*" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0279671" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006152", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "inflammatory polyp of colon; inflammatory polyp of the colon; colonic inflammatory polyp." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Colon Inflammatory Polyp" }, { "@language" : "nl", "@value" : "Colon ontstekingspoliep" }, { "@language" : "it", "@value" : "Polipo infiammatorio del colon" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0021400" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A non-neoplastic polypoid lesion in the colon. It may arise in a background of inflammatory bowel disease or colitis. It is characterized by the presence of a distorted epithelium, inflammation, and fibrosis." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0267392" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006498", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "colonic adenomatous polyp; adenomatous polyp of colon; colon adenomatous polyp; adenomatous polyp of the colon; Adenomatous polyp" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "A polypoid adenoma that arises from and protrudes into the lumen of the colon. Epithelial dysplasia is always present. According to the architectural pattern it is classified as tubular, tubulovillous, or villous." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Adenoma" }, { "@language" : "it", "@value" : "Adenoma" }, { "@language" : "nl", "@value" : "Adenoom" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0021400" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M814000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007131" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008433", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "oat cell carcinoma of the lung; small cell neuroendocrine carcinoma of the lung; small cell neuroendocrine carcinoma of lung; small cell lung carcinoma; small cell carcinoma of lung; oat cell carcinoma of lung; lung oat cell carcinoma; oat cell lung carcinoma; lung small cell carcinoma; small cell lung cancer; small cell carcinoma of the lung; lung small cell neuroendocrine carcinoma" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "small cell cancer of the lung; SCLC1" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "carcinoma polmonare a piccole cellule" }, { "@language" : "nl", "@value" : "kleincellig longcarcinoom" }, { "@language" : "en", "@value" : "small cell lung carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005138" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Small cell lung cancer (SCLC) is a highly aggressive malignant neoplasm, accounting for 10-15% of lung cancer cases, characterized byrapid growth, and early metastasis. SCLC usually manifests as a large hilar mass with bulky mediastinal lymphadenopathy presenting clinically with chest pain, persistent cough, dyspnea, wheezing, hoarseness, hemoptysis, loss of appetite, weight loss, and neurological and endocrine paraneoplastic syndromes. SCLC is primarily reported in elderly people with a history of long-term tobacco exposure." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M804130" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0149925" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://www.ebi.ac.uk/ols/ontologies/doid/Disease" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@id" : "https://www.examode.dei.unipd.it/ontology/General" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "malignant neoplasm of the lung; lung cancer; malignant lung neoplasm; cancer of lung; malignant tumor of the lung; malignant tumor of lung; malignant neoplasm of lung; malignant lung tumor." } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "lung neoplasm; Nonsmall cell lung cancer; alveolar cell carcinoma; lung cancer, protection against." } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A malignant neoplasm involving the lung." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "cancro ai polmoni" }, { "@language" : "nl", "@value" : "longkanker" }, { "@language" : "en", "@value" : "lung cancer" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007847" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0019338", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "besnier-Boeck-Schaumann syndrome; sarcoid; Darier-Roussy sarcoid; Boeck's sarcoid; Besnier-Boeck-Schaumann disease; Boeck's sarcoidosis; lymphogranulomatosis; sarcoidosis; Boeck sarcoid" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "benign lymphogranulomatosis of Schaumann; lupus pernio of Besnier; miliary lupoid of boeck" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "sarcoidosi" }, { "@language" : "en", "@value" : "sarcoidosis" }, { "@language" : "nl", "@value" : "sarcoïdose" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Sarcoidosis is a multisystemic disorder of unknown cause characterized by the formation of immune granulomas in involved organs." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "D028280" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0036202" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0021271", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "villous adenoma of colon" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Adenoma del colon villoso" }, { "@language" : "en", "@value" : "Colon Villous Adenoma" }, { "@language" : "nl", "@value" : "Colon Villous Adenoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006498" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A villous adenoma that involves the colon." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M82611" }, { "@value" : "M826110" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0149862" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0021400", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "colon polyp; polyp of the colon; colonic polyp" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Poliep van de dikke darm" }, { "@language" : "it", "@value" : "Polipo del colon" }, { "@language" : "en", "@value" : "Polyp of Colon" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A polyp that involves the colon." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0009376" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0022394", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "cervical intraepithelial neoplasia" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "Intraepithelial Neoplasia of the Uterine Cervix; Intraepithelial Neoplasms, Cervical; Neoplasm, Cervical Intraepithelial; Intraepithelial Neoplasm, Cervical; Cervix Intraepithelial Neoplasia; Cervical Intraepithelial Neoplasms; Intraepithelial Neoplasia of the Cervix Uteri; Neoplasms, Cervical Intraepithelial; Intraepithelial Neoplasia of Uterine Cervix; Neoplasia, Cervical Intraepithelial; Cervical Intraepithelial Neoplasm; Intraepithelial Neoplasia, Cervical; Cervical intraepithelial neoplasia; NEOPL CERVICAL INTRAEPITHELIAL; Uterine Cervix Intraepithelial Neoplasia; Intraepithelial Neoplasia of Cervix Uteri; Intraepithelial Neoplasia of the Cervix; Cervix Uteri Intraepithelial Neoplasia; Intraepithelial Neoplasia of Cervix; Cervical Dysplasia; Cervical Intraepithelial Neoplasia" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "CIN" }, { "@language" : "nl", "@value" : "cervicale intra-epitheliale neoplasie" }, { "@language" : "it", "@value" : "neoplasia intraepiteliale cervicale" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0206708" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0042487", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "severe dysplasia of the cervix uteri aJCC v6; uterine cervix intraepithelial neoplasia grade 3 aJCC v6; intraepithelial neoplasia of the cervix grade 3 aJCC v6; carcinoma in situ of the uterine cervix aJCC v6; intraepithelial neoplasia of the cervix uteri grade 3 aJCC v6; severe dysplasia of cervix aJCC v6; severe dysplasia of cervix; intraepithelial neoplasia of uterine cervix grade 3 aJCC v6; cervical intraepithelial neoplasia grade 3 aJCC v6; uterine cervix carcinoma in situ aJCC v6; carcinoma in situ of the cervix aJCC v6; FIGO stage 0 carcinoma of uterine cervix; severe dysplasia of cervix uteri aJCC v6; cervix uteri intraepithelial neoplasia grade 3 aJCC v6; grade 3 cervical intraepithelial neoplasia aJCC v6; stage 0 uterine cervix carcinoma; carcinoma in situ of uterine cervix aJCC v6; CIN III - severe dyskaryosis; cervix uteri Severe dysplasia aJCC v6; FIGO stage 0 cervical carcinoma; cervix uteri carcinoma in situ aJCC v6; stage 0 cervical cancer aJCC v6; FIGO stage 0 carcinoma of the cervix uteri; cervical carcinoma in situ aJCC v6; uterine cervix Severe dysplasia aJCC v6; carcinoma in situ of the cervix uteri aJCC v6; severe cervical dysplasia aJCC v6; FIGO stage 0 carcinoma of cervix uteri; carcinoma in situ of cervix aJCC v6; carcinoma in situ of uterine cervix; carcinoma in situ of cervix uteri aJCC v6; cervix intraepithelial neoplasia grade 3 aJCC v6; FIGO stage 0 carcinoma of the uterine cervix; CIN III; cervical intraepithelial neoplasia grade III with severe dysplasia; cervical Severe dysplasia aJCC v6; CIN III - carcinoma in situ of cervix; FIGO stage 0 uterine cervix carcinoma; CIN 3 aJCC v6; severe dysplasia of the uterine cervix aJCC v6; carcinoma of cervix stage 0; intraepithelial neoplasia of cervix uteri grade 3 aJCC v6; squamous intraepithelial neoplasia, grade III; stage 0 cervical cancer; cervix Severe dysplasia aJCC v6; FIGO stage 0 carcinoma of the cervix; carcinoma in situ of cervix; CIN grade 3 aJCC v6; cervical cancer stage 0 aJCC v6; intraepithelial neoplasia of cervix grade 3 aJCC v6; intraepithelial neoplasia of the uterine cervix grade 3 aJCC v6; FIGO stage 0 carcinoma of cervix; cervix carcinoma in situ aJCC v6; severe dysplasia of the cervix aJCC v6; severe dysplasia of uterine cervix aJCC v6; cervix Ca in situ; FIGO stage 0 cervix carcinoma; severe dysplasia of the cervix uteri; FIGO stage 0 cervix uteri carcinoma" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "cervix uteri carcinoma in situ" }, { "@value" : "uterine cervix carcinoma in situ" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "neoplasia intraepiteliale squamosa" }, { "@language" : "nl", "@value" : "squameuze intra-epitheliale neoplasie" }, { "@language" : "en", "@value" : "squamous intraepithelial neoplasia" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005131" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0851140" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0056806", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "non-small cell squamous lung cancer; non-small cell squamous lung carcinoma; squamous non-small cell lung carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "non-small cell squamous lung carcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005233" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A squamous cell carcinoma that arises from the lung. It is characterized by the presence of large malignant cells. It includes the clear cell and papillary variants of squamous cell carcinoma." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M807030" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C4324656" } ] }, { "@id" : "http://purl.obolibrary.org/obo/MP_0011748", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#CeliacAbnormality" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "intestinal synechia; intestinal adhesions" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Formation of fibrous tissue in any part of the intestine as a result of repair or a reactive process." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "fibrosi intestinale" }, { "@language" : "en", "@value" : "intestinal fibrosis" }, { "@language" : "nl", "@value" : "intestinale fibrose" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@language" : "it", "@value" : "fibrosi" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C12284", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Mainstem bronchus; Main Bronchus" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The left and right main bronchi considered as a group." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Belangrijkste bronchus" }, { "@language" : "it", "@value" : "Bronco principale" }, { "@language" : "en", "@value" : "Main Bronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002185" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0024496" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C128298", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Amino Acid, Peptide, or Protein" } ], "http://purl.obolibrary.org/obo/UBPROP_0000010" : [ { "@value" : "Tumor protein 63 isoform 2 is the product of an alternative promoter and start codon located in exon 3 of the human TP63 gene. It also has an N-terminally truncated transactivation domain. Expression of isoform 2 may be tissue specific and aberrant expression may be associated with head and neck squamous cell carcinoma. (Atlas of Genetics and Cytogenetics in Oncology and Haematology)" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Delta Np63 Alpha; Tumor Protein 63 Isoform 2; Delta-N p63-Alpha; p51; DeltaN-Alpha; P51delNalpha; DeltaNp63 Alpha" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Tumor Protein 63 Isoform 2" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "P63" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Tumor protein 63 isoform 2 (586 aa, ; 66 kDa) is encoded by the human TP63 gene. This protein plays a role in the mediation of both transcription and skin development." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C4284135" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C135565", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#CeliacAbnormality" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Pathologic Function" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A rare hyperplastic lesion of Brunner's gland in the duodenum. Although it is usually asymptomatic and discovered incidentally during upper gastrointestinal endoscopy, it may cause hemorrhage." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Brunner's Gland Hyperplasia" }, { "@language" : "nl", "@value" : "Hyperplasie van de klier van Brunner" }, { "@language" : "it", "@value" : "Iperplasia della ghiandola di Brunner" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@language" : "it", "@value" : "“Brunner” + “iperplasia” + “ghiandole”" } ], "https://w3id.org/examode/ontology#definition" : [ { "@language" : "en", "@value" : "Usually hyperplasia of Brunner’s glands. NB: the mere Presence of Brunner’s glands is not automatically an hyperplasia. Rather, hyperplasia Is something the glands may have or not. If they have it, it may be a problem" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0341253" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#SemantcArea" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Location; Anatomic Site" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "We use this as a semantical class for a location of the body. Similar to Topology, but since we are already using that as a class, we did not want to use the same class for this role." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Anatomical Location" }, { "@language" : "nl", "@value" : "Anatomische locatie" }, { "@language" : "it", "@value" : "Posizione anatomica" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Named locations of or within the body." } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1515974" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15189", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Bx; BIOPSY; biopsy; Biopsy" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The removal of cells or tissues for examination by a pathologist. The pathologist may study the tissue under a microscope or perform other tests on the cells or tissue. There are many different types of biopsy procedures. The most common types include: (1) incisional biopsy, in which only a sample of tissue is removed; (2) excisional biopsy, in which an entire lump or suspicious area is removed; and (3) needle biopsy, in which a sample of tissue or fluid is removed with a needle.; The removal of tissue specimens or fluid from the living body for microscopic examination, performed to establish a diagnosis." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia" }, { "@language" : "nl", "@value" : "Biopsie" }, { "@language" : "en", "@value" : "Biopsy" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15329" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0005558" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#SemantcArea" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The investigation, analysis and recognition of the presence and nature of disease, condition, or injury from expressed signs and symptoms; also, the scientific determination of any kind; the concise results of such an investigation." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Diagnose" }, { "@language" : "it", "@value" : "Diagnosi" }, { "@language" : "en", "@value" : "Diagnosis" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15256", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P325" : [ { "@value" : "Surgery to remove the uterus and, sometimes, the cervix. When the uterus and the cervix are removed, it is called a total hysterectomy. When only the uterus is removed, it is called a partial hysterectomy." } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A surgical procedure to remove the uterine body (partial hysterectomy) or the uterine body and cervix (total hysterectomy)." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Hysterectomie" }, { "@language" : "en", "@value" : "Hysterectomy" }, { "@language" : "it", "@value" : "Isterectomia" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C25218" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0020699" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15329", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Health Care Activity" } ], "http://purl.obolibrary.org/obo/NCIT_P325" : [ { "@value" : "A procedure to remove or repair a part of the body or to find out whether disease is present. An operation." } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Operation; surgery; Surgery; Surgical Interventions; Surgical Procedures; Surgically; Surgical Procedure; Type of Surgery; Surgical" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A diagnostic or treatment procedure performed by manual and/or instrumental means, often involving an incision and the removal or replacement of a diseased organ or tissue; of or relating to or involving or used in surgery or requiring or amenable to treatment by surgery." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Chirurgische procedure" }, { "@language" : "it", "@value" : "Operazione chirurgica" }, { "@language" : "en", "@value" : "Surgical Procedure" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C25218" } ], "https://w3id.org/examode/ontology#definition" : [ { "@language" : "en", "@value" : "Type of Intervention that is a surgical procedure." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15389", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Diagnostic Procedure" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Endoscopy and Biopsy; Endoscopic Biopsy" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The removal of tissue specimens or fluid from the living body for microscopic examination, performed to establish a diagnosis. In the case of an endoscopic biopsy, an endoscope is used to obtain the sample." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia endoscopica" }, { "@language" : "en", "@value" : "Endoscopic Biopsy" }, { "@language" : "nl", "@value" : "Endoscopische biopsie" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15189" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "P41****" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0184980" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15402", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "cone biopsy; 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Causes include sexually transmitted diseases and bacterial infections. Clinical manifestations include abnormal vaginal bleeding and vaginal discharge. [def-source: NCI]" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M40000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007860" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C32968", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "MAIN BRONCHUS, LEFT; Left Main Bronchus" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "One of the two main bronchi. It is narrower but longer than the right main bronchus and connects to the left lung." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Bronco principale sinistro" }, { "@language" : "en", "@value" : "Left Main Bronchus" }, { "@language" : "nl", "@value" : "Linker hoofdbronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C12284" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0225630" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C32998", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Lobar Bronchus; Secondary Bronchus" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A part the bronchial tree, arising from the primary bronchi, with each one serving as the airway to a specific lobe of the lung." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Bronco lobare" }, { "@language" : "en", "@value" : "Lobar Bronchus" }, { "@language" : "nl", "@value" : "Lobar Bronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002185" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0225653" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C33486", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Right Main Bronchus; MAIN BRONCHUS, RIGHT" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "One of the two main bronchi. It is wider but shorter than the left main bronchus and connects to the right lung." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Bronco principale destro" }, { "@language" : "nl", "@value" : "Rechter hoofdbronchus" }, { "@language" : "en", "@value" : "Right Main Bronchus" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C12284" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0225608" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C3426", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P325" : [ { "@value" : "A circumscribed loss of integrity of the skin or mucous membrane.; Destruction of an epithelial surface extending into or beyond the basement membrane." } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Ulcerative Inflammation; Ulcer; Ulceration; Ulcers; Ulcerated; ulcer; ULCER; Ulcerative" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Ulcer" }, { "@language" : "it", "@value" : "Ulcera" }, { "@language" : "nl", "@value" : "Zweer" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A circumscribed inflammatory and often suppurating lesion on the skin or an internal mucous surface resulting in necrosis of tissue." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M40030" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@value" : "C0041582" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C38034", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The description of an anatomical region or of a body part." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Topografia" }, { "@language" : "nl", "@value" : "Topografie" }, { "@language" : "en", "@value" : "Topography" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C40196", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Mild Squamous Dysplasia of the Cervix; Low Grade Cervical Squamous Intraepithelial Neoplasia; Low-Grade Cervical SIL; Low-Grade Cervical Squamous Intraepithelial Lesion; Low Grade Cervical Squamous Intraepithelial Lesion; Low-Grade CIN; Cervical Squamous Intraepithelial Neoplasia 1; Low Grade Cervical Squamous Intraepithelial Neoplasia; LSIL; low grade dysplasia; mild dysplasia" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "CIN I" }, { "@language" : "nl", "@value" : "Cervicale squameuze intra-epitheliale neoplasie graad 1" }, { "@language" : "it", "@value" : "Neoplasia cervicale squamosa intraepiteliale di grado 1" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0022394" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A precancerous neoplastic process that affects the cervical squamous epithelium without evidence of invasion. It is usually associated with human papillomavirus infection. It is characterized by the presence of mild atypia in the superficial epithelial layer that may be associated with koilocytosis. Maturation is present in the upper two thirds of the epithelium. Mitotic figures are not numerous and are present in the basal third of the epithelium." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M74006*" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1518005" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C40198", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P325" : [ { "@value" : "A condition in which moderately abnormal cells grow on the thin layer of tissue that covers the cervix. These abnormal cells are not malignant (cancer) but may become cancer." } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@language" : "en", "@value" : "CIN 2; Cervical Squamous Intraepithelial Neoplasia 2; Moderate Squamous Dysplasia of the Cervix; cervical squamous intraepithelial neoplasia 2" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "CIN II" }, { "@language" : "nl", "@value" : "Cervicale squameuze intra-epitheliale neoplasie graad 2" }, { "@language" : "it", "@value" : "Neoplasia cervicale squamosa intraepiteliale di grado 2" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006137" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Cervical squamous intraepithelial neoplasia characterized by the presence of maturation in the upper half of the squamous epithelium and conspicuous nuclear atypia which is present in all epithelial layers. Mitotic figures are present in the basal two thirds of the epithelium." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M74007*" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0349459" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4086", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#DiseaseAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Dyscrasia; Dysplasia; Dysplastic; dyscrasia; dysplasia" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A usually neoplastic transformation of the cell, associated with altered architectural tissue patterns. The cellular changes include nuclear and cytoplasmic abnormalities. Molecular genetic abnormalities are also often found and, in some instances, may lead to cancer." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Displasia" }, { "@language" : "en", "@value" : "Dysplasia" }, { "@language" : "nl", "@value" : "Dysplasie" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M74000" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0334044" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4124", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Metastatic Adenocarcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Adenocarcinoma metastatico" }, { "@language" : "nl", "@value" : "Gemetastaseerd adenocarcinoom" }, { "@language" : "en", "@value" : "Metastatic Adenocarcinoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "An adenocarcinoma which has spread from its original site of growth to another anatomic site." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M80106" }, { "@value" : "M81406" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@value" : "C0334277" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4520", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Neoplastic Process" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Uterine Cervix Adenocarcinoma in situ; Adenocarcinoma in situ of the Uterine Cervix; Cervix Uteri Adenocarcinoma in situ; Adenocarcinoma in situ of Uterine Cervix; Cervical Adenocarcinoma In Situ AJCC v7; Adenocarcinoma in situ of the Cervix; Cervix Adenocarcinoma in situ; Adenocarcinoma in situ of Cervix Uteri; Adenocarcinoma in situ of Cervix; Adenocarcinoma in situ of the Cervix Uteri; Cervical Adenocarcinoma In Situ" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "adenocarcinoma cervicale in situ" }, { "@language" : "nl", "@value" : "cervicaal adenocarcinoom in situ" }, { "@language" : "en", "@value" : "cervical adenocarcinoma in situ" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005153" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "tage 0 includes: (Tis, N0, M0). Tis: Carcinoma in situ. N0: No regional lymph node metastasis. M0: No distant metastasis. FIGO no longer includes stage 0." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0346203" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C46109", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Qualitative Concept" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Male Gender, Self Report; Male; Male Gender; Male Gender, Self Reported" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A person who belongs to the sex that normally produces sperm. The term is used to indicate biological sex distinctions, cultural gender role distinctions, or both." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "genere maschile" }, { "@language" : "en", "@value" : "male gender" }, { "@language" : "nl", "@value" : "mannelijk geslacht" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "An individual who reports belonging to the cultural gender role distinction of male" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1706180" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C46110", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Female Gender, Self Reported; Female Gender, Self Report; Female; Female Gender" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A person who belongs to the sex that normally produces ova. The term is used to indicate biological sex distinctions, or cultural gender role distinctions, or both. [def-source: NCI]" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "female gender" }, { "@language" : "it", "@value" : "genere femminile" }, { "@language" : "nl", "@value" : "vrouwelijk geslacht" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "An individual who reports belonging to the cultural gender role distinction of female." } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C47891", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Activity" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A general class representing a test." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "" }, { "@language" : "en", "@value" : "test" }, { "@language" : "it", "@value" : "test" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A procedure for critical evaluation; a means of determining the presence, quality, or truth of something" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Text" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0392366" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4847", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#ColonAnnotation" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Finding" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Dysplasia of the Colon; Colonic Dysplasia; Dysplasia of Colon; Colon Dysplasia" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A morphologic finding indicating the presence of dysplastic glandular epithelial cells in the colonic mucosa. There is no evidence of invasion." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Colon Dysplasia" }, { "@language" : "nl", "@value" : "Colon dysplasie" }, { "@language" : "it", "@value" : "Displasia del colon" } ], "http://www.w3.org/2004/02/skos/core#broader" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4086" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1302363" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4848", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#ColonAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Low Grade Dysplasia of the Colon; Low-Grade Dysplasia of Colon; Low-Grade Dysplasia of the Colon; Mild Dysplasia of Colon; Low-Grade Colon Dysplasia; Mild Colon Dysplasia; Low-Grade Colonic Dysplasia; Mild Colonic Dysplasia; Mild Dysplasia of the Colon; Low Grade Colon Dysplasia; Low Grade Colonic Dysplasia; Low Grade Dysplasia of Colon" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A morphologic finding indicating the presence of mild dysplastic cellular changes and mild architectural changes in the glandular epithelium of the colonic mucosa. There is no evidence of invasion." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Displasia del colon lieve" }, { "@language" : "en", "@value" : "Mild Colon Dysplasia" }, { "@language" : "nl", "@value" : "Milde colondysplasie" } ], "http://www.w3.org/2004/02/skos/core#broader" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C8362" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0586367" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4847" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4849", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#ColonAnnotation" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Finding" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Moderate Dysplasia of the Colon; Moderate Colonic Dysplasia; Moderate Colon Dysplasia; Moderate Dysplasia of Colon" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A morphologic finding indicating the presence of moderate dysplastic cellular changes and moderate architectural changes in the glandular epithelium of the colonic mucosa. There is no evidence of invasion." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Displasia moderata del colon" }, { "@language" : "nl", "@value" : "Matige colondysplasie" }, { "@language" : "en", "@value" : "Moderate Colon Dysplasia" } ], "http://www.w3.org/2004/02/skos/core#broader" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C8363" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0586368" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4847" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4930", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Disease or Syndrome" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Hyperplastic Colonic Polyp; Colon HP; Metaplastic Polyp of the Colon; Metaplastic Polyp of Colon; Metaplastic Colonic Polyp; Hyperplastic Polyp of the Colon; Metaplastic Colon Polyp; Hyperplastic Polyp of Colon; Colon Metaplastic Polyp; Colon MP; Colon Hyperplastic Polyp; Colonic Hyperplastic Polyp" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Colon Hyperplastic Polyp" }, { "@language" : "nl", "@value" : "Colon Hyperplastic Polyp" }, { "@language" : "it", "@value" : "Polipo iperplastico del colon" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0021400" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A serrated polypoid lesion that arises in the colon. It is usually found in the distant colon and it rarely produces symptoms. This group includes goblet cell rich, mucin poor, and microvesicular hyperplastic polyps." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M72040" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0742608" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C51628", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Diagnostic Procedure" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@language" : "en", "@value" : "Biopsy (cervical); Other method, specify: ECC" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Removal of tissue from the cervix for microscopic examination." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia cervicale" }, { "@language" : "en", "@value" : "Cervical biopsy" }, { "@language" : "nl", "@value" : "Cervicale biopsie" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15389" }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C25218" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0195314" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C51678", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Colonoscopic Biopsy; Colonoscopy and Biopsy; Biopsy of Colon" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Removal of tissue from the colon for microscopic examination, using an endoscope." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia del colon" }, { "@language" : "nl", "@value" : "Biopsie van de dikke darm" }, { "@language" : "en", "@value" : "Biopsy of Colon" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15389" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "P11400" }, { "@value" : "P40****" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0192867" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C51683", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Diagnostic Procedure" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Endoscopic Biopsy of Duodenum; 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The tissue may be removed using a bronchoscope (a thin, lighted, tube-like instrument that is inserted through the trachea and into the lung). It may also be removed using a fine needle inserted through the chest wall, by surgery guided by a video camera inserted through the chest wall, or by an open biopsy. In an open biopsy, a doctor makes an incision between the ribs, removes a sample of lung tissue, and closes the wound with stitches." } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Removal of tissue from the lung, for microscopic examination." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia polmonare" }, { "@language" : "nl", "@value" : "Longbiopsie" }, { "@language" : "en", "@value" : "Lung Biopsy" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15389" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0189485" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C51782", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Diagnostic Procedure" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Bronchial Biopsy; Biopsy of Bronchus" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Removal of tissue from the bronchus for microscopic examination." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia bronchiale" }, { "@language" : "en", "@value" : "Bronchial Biopsy" }, { "@language" : "nl", "@value" : "Bronchiale biopsie" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15389" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Removal of tissue from the bronchus for microscopic examination." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0740463" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C51944", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Occupational Activity" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Immunohistochemical Test" }, { "@language" : "nl", "@value" : "Immunohistochemische test" }, { "@language" : "it", "@value" : "Test immunoistochimico" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C47891" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" }, { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "presence of word “CD3”/“test immunoistochimico”\n/“colorazione immunoistochimica”" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A diagnostic test in which an antibody is used to link a cellular antigen specifically to a stain that can be seen with a microscope." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C5496", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Gene or Genome" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Tubulovillous Adenoma of Colon; Colon Tubulovillous Adenoma; Tubulovillous Adenoma of the Colon; Colonic Tubulovillous Adenoma" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Adenoma tubulovilloso del colon" }, { "@language" : "en", "@value" : "Colon Tubulovillous Adenoma" }, { "@language" : "nl", "@value" : "Colon Tubulovillous Adenoma" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0006498" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A neoplasm that arises from the glandular epithelium of the colonic mucosa. 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It is characterized by a tubular architectural pattern. The neoplastic glandular cells have dysplastic features." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M821100" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1112503" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C80497", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Laboratory Procedure" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Cytokeratin 5/6 Expression; CK 5/6 Immunohistochemical Expression; CK 5/6 Expression; CK5/6; Cytokeratin 5/6 Immunohistochemical Expression" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Cytokeratin 5/6" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CK5/6" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "An immunohistochemical diagnostic test utilizing an antibody to detect both cytokeratin 5 and 6 in tissues." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C2825225" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C8362", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#DiseaseAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "CIN 1; DYSPLASIA, MILD; MILD DYSPLASIA, CIN 1" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A morphologic finding indicating the presence of mild cellular atypia associated with mild architectural changes in a tissue sample." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Displasia lieve" }, { "@language" : "en", "@value" : "Mild Dysplasia" }, { "@language" : "nl", "@value" : "Milde dysplasie" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M74006" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0334046" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4086" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C8363", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#DiseaseAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Moderate Dysplasia; CIN 2; DYSPLASIA, MODERATE; MODERATE DYSPLASIA, CIN 2" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A morphologic finding indicating the presence of moderate cellular atypia associated with moderate architectural changes in a tissue sample." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Displasia moderata" }, { "@language" : "nl", "@value" : "Matige dysplasie" }, { "@language" : "en", "@value" : "Moderate Dysplasia" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M74007" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0334047" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C156083" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C8364", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#DiseaseAnnotation" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@value" : "Finding" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Severe Dysplasia; CIN 3; DYSPLASIA, SEVERE; SEVERE DYSPLASIA, CIN 3" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A morphologic finding indicating the presence of severe cellular atypia associated with severe architectural changes in a tissue sample." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Displasia grave" }, { "@language" : "nl", "@value" : "Ernstige dysplasie" }, { "@language" : "en", "@value" : "Severe Dysplasia" }, { "@language" : "da", "@value" : "svær dysplasi" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0334048" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C156083" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C86074", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Hemicolectomy" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Surgical removal of approximately half of the colon." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Emicolectomia" }, { "@language" : "nl", "@value" : "Hemicolectomie" }, { "@language" : "en", "@value" : "Hemicolectomy" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15329" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "P11150" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@value" : "C0546535" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_C94470", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Isterectomia radicale" }, { "@language" : "en", "@value" : "Radical Hysterectomy" }, { "@language" : "nl", "@value" : "Radicale hysterectomie" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15256" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C2987682" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_P106", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://purl.obolibrary.org/obo/NCIT_P108" : [ { "@value" : "Semantic_Type" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Semantic_Type" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "In general, applying semantic types aids in allowing users (or computer programs) to draw conclusions about concepts by virtue of the categories to which they have been assigned. We use a set of semantic types developed for the UMLS Metathesaurus. There are currently 134 semantic types in the UMLS. NB: this property is different from hasSemanticArea since this property serves as an annotation to give, when possible, a label indicating the semantic type. This label is taken from Ontobee. hasSemanticArea is used instead to give a tag to every entity, identifying what type of entity that is." }, { "@value" : "Used to specify the semantic type of something." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha tipo semantico" }, { "@language" : "en", "@value" : "has semantic type" }, { "@language" : "nl", "@value" : "heeft een semantisch type" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A property that represents a description of the sort of thing or category to which a concept belongs in the context of the UMLS semantic network." } ], "https://w3id.org/examode/ontology#hasSynonymLabel" : [ { "@value" : "Semantic Type" } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_P108", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Preferred Term; Preferred_Name; Preferred Name" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "When something has a preferred name, you should specify it." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Preferred Name" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "A property representing the word or phrase that NCI uses by preference to refer to the concept." } ] }, { "@id" : "http://purl.obolibrary.org/obo/NCIT_P325", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Alternatieve definitie" }, { "@language" : "da", "@value" : "Alternativ definition" }, { "@language" : "en", "@value" : "Alternative Definition" }, { "@language" : "it", "@value" : "Definizione alternativa" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "https://w3id.org/examode/ontology#definition" } ] }, { "@id" : "http://purl.obolibrary.org/obo/OAE_0001850", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Granuloma" }, { "@language" : "it", "@value" : "Granuloma" }, { "@language" : "nl", "@value" : "Granuloom" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "An inflammation AE that shows localized nodular inflammation found in tissues." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M44000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@value" : "C0018188" } ] }, { "@id" : "http://purl.obolibrary.org/obo/OBA_0004525", "@type" : [ "http://www.w3.org/2000/01/rdf-schema#Datatype" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "intra-epitheliale lymfocythoeveelheid" }, { "@language" : "en", "@value" : "intraepithelial lymphocyte amount" }, { "@language" : "it", "@value" : "quantità di linfociti intraepiteliali" } ], "http://www.w3.org/2002/07/owl#equivalentClass" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "LIE, ILE, “linfociti intraepiteliali pari a”, “linfociti”, ”entorociti\"" } ] }, { "@id" : "http://purl.obolibrary.org/obo/OMIT_0005738", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#CeliacAbnormality" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Buildup of fluid in the body's tissue." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Edema" }, { "@language" : "it", "@value" : "Edema" }, { "@language" : "nl", "@value" : "Oedeem" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@language" : "it", "@value" : "Edema" } ] }, { "@id" : "http://purl.obolibrary.org/obo/SYMP_0000299", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#CeliacAbnormality" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "hyperaemia; hyperemic" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Hyperemia is a hemic system symptom consisting of an excess of blood in a body part as from an increased flow of blood due to vasodilation." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "hyperemia" }, { "@language" : "nl", "@value" : "hyperemie" }, { "@language" : "it", "@value" : "iperemia" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@language" : "it", "@value" : "iperemia" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0000316", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "cervix mucus" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A substance produced by the cervix and endocervical glands[BTO]. Thick acidic mucus that blocks the cervical os after mestruation [WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "baarmoederhalsslijm" }, { "@language" : "en", "@value" : "cervical mucus" }, { "@language" : "it", "@value" : "muco cervicale" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1619816" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0000320", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "doudenal mucosa; mucosa of duodenum; mucous membrane of duodenum; duodenal mucous membrane" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "duodenum mucosa" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A mucosa that is part of a duodenum." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "duodenal mucosa" }, { "@language" : "it", "@value" : "mucosa duodenale" }, { "@language" : "nl", "@value" : "slijmvlies van de twaalfvingerige darm" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "mucosa duodenale" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0227284" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0000916", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://purl.obolibrary.org/obo/UBPROP_0000010" : [ { "@value" : "Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "abdominopelvis; abdominopelvic region" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "belly; celiac region; adult abdomen" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The subdivision of the vertebrate body between the thorax and pelvis. The ventral part of the abdomen contains the abdominal cavity and visceral organs. The dorsal part includes the abdominal section of the vertebral column." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Abdomen" }, { "@language" : "it", "@value" : "Addome" }, { "@language" : "nl", "@value" : "Buik" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "TY4100" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@value" : "C0000726" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001052", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "terminal portion of intestine" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "terminal portion of large intestine; rectal sac; intestinum rectum" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Rectum, Not Otherwise Specified." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Rectum, NOS" }, { "@language" : "nl", "@value" : "Rectum, niet anders gespecificeerd." }, { "@language" : "it", "@value" : "Retto, non altrimenti specificato." } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#annotatedRule" : [ { "@value" : "Presence of keyword \"Rectum NOS\" in \"Materiali\" field in AOEC Database." } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "The terminal portion of the intestinal tube, terminating with the anus." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T68000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0034896" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001153", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "caecum; cecum; intestinum crassum caecum" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "intestinum crassum cecum; intestinum caecum; blindgut; blind intestine" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A pouch in the digestive tract that connects the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Caecum" }, { "@language" : "it", "@value" : "Cieco" }, { "@language" : "nl", "@value" : "blinde darm" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#annotatedRule" : [ { "@value" : "Keyword Caecum in \"Materiali\" field" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67100" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0007531" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "large bowel" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "hindgut" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Colon, Not Otherwise Specified" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Colon, NOS" }, { "@language" : "it", "@value" : "Colon, non altrimenti specificato" }, { "@language" : "nl", "@value" : "Dikke darm, niet anders gespecificeerd" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Last portion of the large intestine before it becomes the rectum." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0009368" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001156", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "colon ascendens" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "spiral colon" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Section of colon which is distal to the cecum and proximal to the transversecolon." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Ascending Colon" }, { "@language" : "it", "@value" : "Colon ascendente" }, { "@language" : "nl", "@value" : "Oplopende dubbele punt" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67200" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0227375" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001157", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "colon transversum" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The proximal-distal subdivision of colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure. Continuous with the descending colon." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Colon trasverso" }, { "@language" : "nl", "@value" : "Dwars dubbele punt" }, { "@language" : "en", "@value" : "Transverse Colon" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#annotatedRule" : [ { "@value" : "Keyword \"trasverso\" in \"Materiali\" field." } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67400" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0227386" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001158", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "colon descendens" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Aflopende dubbele punt" }, { "@language" : "it", "@value" : "Colon discendente" }, { "@language" : "en", "@value" : "Descending colon" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67600" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0227389" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001159", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "colon sigmoideum; pelvic colon; sigmoid colon; sigmoid flexure" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Colon sigmoideo" }, { "@language" : "en", "@value" : "Sigmoid colon" }, { "@language" : "nl", "@value" : "Sigmoid colon" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67700" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0227391" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001164", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "has_exact_synonym: stomach greater curvature" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Curvatura maggiore dello stomaco" }, { "@language" : "en", "@value" : "Greater curvature of stomach" }, { "@language" : "nl", "@value" : "Grotere kromming van de maag" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInMateriali" : [ { "@value" : "Corpo" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001165", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym" : [ { "@value" : "antrum" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "antrum of stomach; stomach pyloric antrum" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "antrum pyloricum; antrum of Willis; stomach antrum; antrum pylori; gastric antrum" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The area at the bottom of the stomach on the caudal side of the pyloric canal that contains gastrin-producing G cells, which stimulate acid production, and the luminal pH-sensitive population of somatostatin-producing D cells." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "antro pilorico" }, { "@language" : "en", "@value" : "pyloric antrum" }, { "@language" : "nl", "@value" : "pylorus antrum" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInMateriali" : [ { "@value" : "Antro" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0034193" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001212", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A compound tubular submucosal gland found in that portion of the duodenum which is above the hepatopancreatic sphincter (Sphincter of Oddi). The main function of these glands is to produce a mucus-rich alkaline secretion (containing bicarbonate)[WP]. [database_cross_reference: http://en.wikipedia.org/wiki/Brunner's_glands]" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "duodenal gland" }, { "@language" : "nl", "@value" : "duodenale klier" }, { "@language" : "it", "@value" : "ghiandola duodenale" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasOntobeeAnnotation" : [ { "@value" : "editor note: currently defined as equivalent to any submucosal gland in the duodenum.\ndatabase_cross_reference: EMAPA:36522; GAID:314; NCIT:C13010; FMA:15060; http://www.snomedbrowser.com/Codes/Details/41298001; http://en.wikipedia.org/wiki/Brunner's_glands; MESH:A03.492.411.620.270.322; UMLS:C0006323; MA:0001551; http://linkedlifedata.com/resource/umls/id/C0006323; BTO:0002376\nhas_exact_synonym: submucosal gland of duodenum; Brunner's gland; gland of Brunner\nhas_obo_namespace: uberon\nhas_related_synonym: glandula duodenales Brunneri; glandula duodenales\nhttp://www.geneontology.org/formats/oboInOwl#id: UBERON:0001212\nin_subset: http://purl.obolibrary.org/obo/uberon/core#organ_slim; http://purl.obolibrary.org/obo/uberon/core#pheno_slim; http://purl.obolibrary.org/obo/uberon/core#uberon_slim\ntaxon_notes: Said to be absent outside mammlian (Andrew 1959) but Ziswiler and Farner (1972) noted similar glands at the gastroduodenal junction of some birds" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002048", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://purl.obolibrary.org/obo/NCIT_P325" : [ { "@value" : "Either of two organs which allow gas exchange absorbing oxygen from inhaled air and releasing carbon dioxide with exhaled air." } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "pulmo" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Respiration organ that develops as an oupocketing of the esophagus." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Long" }, { "@language" : "en", "@value" : "Lung" }, { "@language" : "it", "@value" : "Polmone" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T28000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0024109" } ], "https://w3id.org/examode/ontology#taxonNotes" : [ { "@value" : "respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://purl.obolibrary.org/obo/UBPROP_0000001" : [ { "@value" : "The fixed portion of the small intestine deeply lodged in the posterior wall of the abdomen and extending from the pylorus to the beginning of the jejunum." } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "upper intestine; proximal intestine" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Duodeno" }, { "@language" : "en", "@value" : "Duodenum" }, { "@language" : "nl", "@value" : "Twaalfvingerige darm" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T-64300" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C001330" } ], "https://w3id.org/examode/ontology#taxonNotes" : [ { "@value" : "In fish, the divisions of the small intestine are not as clear, and the terms anterior intestine or proximal intestine may be used instead of duodenum.; In humans, the duodenum is a hollow jointed tube about 10-15 inches (25-38 centimetres) long connecting the stomach to the jejunum. It begins with the duodenal bulb and ends at the ligament of Treitz." } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002116", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "intestinum ileum; lower intestine; posterior intestine; distal intestine" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The portion of the small intestine that extends from the jejunum to the colon" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Ileo" }, { "@language" : "en", "@value" : "Ileum" }, { "@language" : "nl", "@value" : "Ileum" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67921" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1709868" } ], "https://w3id.org/examode/ontology#taxonNotes" : [ { "@value" : "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum." } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002185", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "bronchi; bronchial trunk" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "bronchial tissue" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The upper conducting airways of the lung; these airways arise from the terminus of the trachea" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Bronchus" }, { "@language" : "nl", "@value" : "Bronchus" }, { "@language" : "it", "@value" : "Bronco" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T26000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0006255" } ], "https://w3id.org/examode/ontology#taxonNotes" : [ { "@value" : "In humans, the main bronchus is histologically identical to trachea; 2ary and 3ary bronchi are not; epithelium becomes simple columnar, goblet cell number decreases, elastic fibers in lamina propria increases, distribution more uniform. Muscular layer between mucosa and submucosa appears. cartilage rings become discontinuous plates connected by fibrous connective tissue" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0003346", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "mucous membrane of rectum; rectum mucous membrane; mucosa of organ of rectum; rectal mucosa; rectum mucosa; rectal mucous membrane; rectum mucosa of organ; organ mucosa of rectum; rectum organ mucosa" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A mucosa that is part of a rectum" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Membrana mucosa rettale" }, { "@language" : "nl", "@value" : "Rectaal slijmvlies" }, { "@language" : "en", "@value" : "Rectal mucous membrane" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T68010" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0227395" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0003728", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "mediastinal part of chest" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The central part of the thoracic cavity enclosed by the left and right pleurae." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Mediastino" }, { "@language" : "en", "@value" : "Mediastinum" }, { "@language" : "nl", "@value" : "Mediastinum" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "https://www.examode.dei.unipd.it/ontology/Topography" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "TY2300" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0025066" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0004801", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://purl.obolibrary.org/obo/UBPROP_0000010" : [ { "@value" : "The epithelium of the cervix is varied. The ectocervix (more distal, by the vagina) is composed of nonkeratinized stratified squamous epithelium. The endocervix (more proximal, within the uterus) is composed of simple columnar epithelium." } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "cervical epithelium; epithelium of cervix; cervix epithelial tissue; cervical canal epithelial tissue; cervical canal epithelium" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An epithelium that is part of a uterine cervix" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "cervix epitelium" }, { "@language" : "nl", "@value" : "cervix epitheel" }, { "@language" : "it", "@value" : "epitelio della cervice" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1711358" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0006922", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "cervical squamous epithelium" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The squamous epithelium of the cervical portio is similar to that of the vagina, except that it is generally smooth and lacks rete pegs. Colposcopically, it appears featureless except for a fine network of vessels which is sometimes visible. The relative opacity and pale pink coloration of the squamous epithelium derives from its multi-layered histology and the location of its supporting vessels below the basement membrane." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "cervix plaveiselepitheel" }, { "@language" : "en", "@value" : "cervix squamous epithelium" }, { "@language" : "it", "@value" : "epitelio squamoso della cervice" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0004801" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1707351" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0007644", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "lymph node of thorax" } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "deep thoracic lymph node" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A lymph node that is part of a thorax. Includes lymph nodes of the lungs and mediastinal lymph nodes" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Linfonodo toracico" }, { "@language" : "nl", "@value" : "Thoracale lymfeknoop" }, { "@language" : "en", "@value" : "Thoracic lymph node" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T083000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0229745" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0008342", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An intestinal villus in the duodenum." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "intestinal villus of duodenum" }, { "@language" : "nl", "@value" : "intestinale villus van de twaalfvingerige darm" }, { "@language" : "it", "@value" : "villi intestinali del duodeno" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0008346", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "epithelium of duodenum" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An epithelium that is part of a duodenum." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "duodenaal epitheel" }, { "@language" : "en", "@value" : "duodenal epithelium" }, { "@language" : "it", "@value" : "epitelio duodenale" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0008971", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "distal colon" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The distal portion of the colon; it develops embryonically from the hindgut and functions in the storage and elimination of waste." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Colon sinistro" }, { "@language" : "en", "@value" : "Left colon" }, { "@language" : "nl", "@value" : "Linker dubbele punt" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67995" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0227388" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0008972", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "proximal colon" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The proximal portion of the colon, extending from the ileocecal valve usually to a point proximal to the left colic flexure; it develops embryonically from the terminal portion of the midgut and functions in absorption." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Colon destro" }, { "@language" : "nl", "@value" : "Rechter dubbele punt" }, { "@language" : "en", "@value" : "Right colon" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67965" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1305188" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0012250", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://purl.obolibrary.org/obo/UBPROP_0000010" : [ { "@value" : "The 'glandular' or columnar epithelium of the cervix is located cephalad to the squamocolumnar junction. It covers a variable amount of the ectocervix and lines the endocervical canal. It is comprised of a single layer of mucin-secreting cells. The epithelium is thrown into longitudinal folds and invaginations that make up the so-called endocervical glands (they are not true glands). These infolding crypts and channels make the cytologic and colposcopic detection of neoplasia less reliable and more problematic. The complex architecture of the endocervical glands gives the columnar epithelium a papillary appearance through the colposcope and a grainy appearance upon gross visual inspection. The single cell layer allows the coloration of the underlying vasculature to be seen more easily. Therefore, the columnar epithelium appears more red in comparison with the more opaque squamous epithelium." } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "cervix columnar epithelium" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A glandular epithelium that is part of a uterine cervix." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "cervix glandulair epitheel" }, { "@language" : "en", "@value" : "cervix glandular epithelium" }, { "@language" : "it", "@value" : "epitelio ghiandolare della cervice" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0004801" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C2987682" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0012251", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "ectocervical epithelium; exocervical epithelium" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A epithelium that is part of a ectocervix." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "epitelio esocervicale" }, { "@language" : "nl", "@value" : "exocervicaal epitheel" }, { "@language" : "en", "@value" : "exocervical epithelium" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0004801" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1283920" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0012253", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym" : [ { "@value" : "squamocolumnar junction" } ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "squamocolumnar junction of uterine cervix; squamo-columnar junction of uterine cervix" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Region of cervical epithelium where columnar epithelium of endocervic and the stratified non-keratinising squamous epithelium of the ectocervic meet" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "cervical squamo-columnar junction" }, { "@language" : "nl", "@value" : "cervicale squamocolumnaire overgang" }, { "@language" : "it", "@value" : "giunzione squamocolonnare cervicale" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0004801" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C3273256" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0013482", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "duodenal crypt; duodenal crypt of Lieberkuhn" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An intestinal crypt that is located in the duodenum." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "cripta di Lieberkuhn del duodeno" }, { "@language" : "en", "@value" : "crypt of Lieberkuhn of duodenum" }, { "@language" : "nl", "@value" : "crypte van Lieberkuhn van de twaalfvingerige darm" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasOntobeeAnnotation" : [ { "@value" : "database_cross_reference: EMAPA:37838; FMA:269063\nhas_exact_synonym: duodenal crypt; duodenal crypt of Lieberkuhn\nhas_obo_namespace: uberon\nhttp://www.geneontology.org/formats/oboInOwl#id: UBERON:0013482\nin_subset: http://purl.obolibrary.org/obo/uberon/core#pheno_slim" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0013644", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "duodenal cap; bulbus (duodenum); ampulla duodeni; duodenal cap viewed radiologically; bulbus duodeni; ampulla (duodenum); ampulla of duodenum" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The very first part of the duodenum which is slightly dilated." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ampolla duodenale" }, { "@language" : "en", "@value" : "duodenal ampulla" }, { "@language" : "nl", "@value" : "duodenale ampulla" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0015834", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "lamina propria of duodenum; duodenal lamina propria; lamina propria mucosae of duodenum" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A lamina propria that is part of a duodenum." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "duodenum lamina propria" }, { "@language" : "nl", "@value" : "duodenum lamina propria" }, { "@language" : "it", "@value" : "lamina propria del duodeno" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0002114" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBERON_0036214", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "rectosigmoid region" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An anatomical junction that is between the sigmoid colon and rectum." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Giunzione rettosigmoidea" }, { "@language" : "nl", "@value" : "Rectosigmoid junctie" }, { "@language" : "en", "@value" : "Rectosigmoid junction" } ], "http://www.w3.org/2002/07/owl#partOf" : [ { "@id" : "http://purl.obolibrary.org/obo/UBERON_0001155" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "T67921" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1709868" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBPROP_0000001", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Definizione esterna" }, { "@language" : "da", "@value" : "Ekstern definition" }, { "@language" : "nl", "@value" : "Externe definitie" }, { "@language" : "en", "@value" : "external definition" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "https://w3id.org/examode/ontology#definition" } ] }, { "@id" : "http://purl.obolibrary.org/obo/UBPROP_0000010", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Note strutturali" }, { "@language" : "nl", "@value" : "Structurele opmerkingen" }, { "@language" : "da", "@value" : "Strukturelle noter" }, { "@language" : "en", "@value" : "structure notes" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "https://w3id.org/examode/ontology#definition" } ] }, { "@id" : "http://purl.obolibrary.org/obo/VT_0010209", "@type" : [ "http://www.w3.org/2000/01/rdf-schema#Datatype" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "duodenum villi lengte" }, { "@language" : "en", "@value" : "duodenum villi length" }, { "@language" : "it", "@value" : "lunghezza dei villi del duodeno" } ], "http://www.w3.org/2002/07/owl#equivalentClass" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "\"villi\" + characterization" } ] }, { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This is the main class of the ontology. The Clinical Case is one record in the database, and in this version of the ontology may be of one of four diseases: celiac disease, lung cancer, cervix cancer, colon cancer. This class is sub-instantiated to the other different sub-classes " } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "https://www.examode.dei.unipd.it/ontology/" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Caso clinico" }, { "@language" : "en", "@value" : "Clinical Case Report" }, { "@language" : "nl", "@value" : "Klinisch casusrapport" }, { "@language" : "da", "@value" : "Klinisk sagsrapport" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ] }, { "@id" : "http://purl.org/dc/elements/1.1/identifier", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Property connecting a case to its id (follows dublin core specification http://www.ukoln.ac.uk/metadata/dcmi-ieee/identifiers/)" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "identificatore" }, { "@language" : "en", "@value" : "identifier" }, { "@language" : "nl", "@value" : "identifier" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#anyURI" } ] }, { "@id" : "http://purl.org/dc/elements/1.1/title", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ] }, { "@id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A property to connect an entity to broad synobyms." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha sinonimi generici" }, { "@language" : "nl", "@value" : "har generiske synonymer" }, { "@language" : "en", "@value" : "has broad synonym" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym" } ] }, { "@id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "An alias in which the alias exhibits true synonymy." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha sinonimi esatti" }, { "@language" : "nl", "@value" : "har nøjagtige synonymer" }, { "@language" : "en", "@value" : "hasExactSynonym" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym" } ] }, { "@id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha sinonimi correlati" }, { "@language" : "nl", "@value" : "har relaterede synonymer" }, { "@language" : "en", "@value" : "has related synonym" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym" } ] }, { "@id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonym", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha sinonimo" }, { "@language" : "da", "@value" : "har synonym" }, { "@language" : "en", "@value" : "has synonym" }, { "@language" : "nl", "@value" : "heeft synoniem" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "http://www.w3.org/1999/02/22-rdf-syntax-ns#Bag", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Bag" } ], "http://www.w3.org/2002/07/owl#sameAs" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotationBag" } ] }, { "@id" : "http://www.w3.org/2001/XMLSchema#anyURI", "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "internal ID (different from the dublin core specification for ID, http://www.ukoln.ac.uk/metadata/dcmi-ieee/identifiers/), used for internal use" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha ID interno" }, { "@language" : "da", "@value" : "har internt id" }, { "@language" : "en", "@value" : "has internal ID" }, { "@language" : "nl", "@value" : "heeft interne ID" } ] }, { "@id" : "http://www.w3.org/2002/07/owl#cardinality", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger" } ] }, { "@id" : "http://www.w3.org/2002/07/owl#maxCardinality", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger" } ] }, { "@id" : "http://www.w3.org/2002/07/owl#minCardinality", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger" } ] }, { "@id" : "http://www.w3.org/2002/07/owl#partOf", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "partOf" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ] }, { "@id" : "http://www.w3.org/2002/07/owl#sameAs", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty", "http://www.w3.org/2002/07/owl#SymmetricProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "The property that determines that two given individuals are equal." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "http://www.w3.org/2002/07/owl#" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "sameAs" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ] }, { "@id" : "http://www.w3.org/2004/02/skos/core#broader", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Property used to build a hierarchy among the elements of an annotation. When one thing that can be an annotation to an outcome is inside a hierarchy, it is connected to its parent through this property." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ] }, { "@id" : "http://xmlns.com/foaf/0.1/maker", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An agent that made this thing." }, { "@value" : "In this ontology the property maker is used to connect a clinical case report to the organization that produced it. For future possibilities, we put domain and range to owl:Thing." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "maker" }, { "@language" : "en", "@value" : "maker" }, { "@language" : "nl", "@value" : "producent" }, { "@language" : "it", "@value" : "produttore" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "The maker property relates something to a Agent that made it. As such it is an inverse of the made property.\n\nThe name (or other rdfs:label) of the maker of something can be described as the dc:creator of that thing.\n\nFor example, if the thing named by the URI http://danbri.org/ has a maker that is a Person whose name is 'Dan Brickley', we can conclude that http://danbri.org/ has a dc:creator of 'Dan Brickley'." } ] }, { "@id" : "http://xmlns.com/foaf/0.1/organization", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@id" : "https://www.examode.dei.unipd.it/ontology/General" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "An organization that, in the context of the ExaMode program, provides clinical case records. It is usually an Hospital (e.g. AOEC or Radbound)." } ], "http://www.w3.org/2000/01/rdf-schema#isDefinedBy" : [ { "@id" : "https://www.examode.dei.unipd.it/ontology/" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Organisatie" }, { "@language" : "en", "@value" : "Organization" }, { "@language" : "it", "@value" : "Organizzazione" } ] }, { "@id" : "https://hpo.jax.org/app/browse/term/HP:0003581", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Onset of disease manifestations in adulthood, defined here as at the age of 16 years or later." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Adult onset" }, { "@language" : "it", "@value" : "Gruppo d'età adulta" }, { "@language" : "da", "@value" : "voksen alder gruppe" }, { "@language" : "nl", "@value" : "volwassen aanvang" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://hpo.jax.org/app/browse/term/HP:0003674" } ] }, { "@id" : "https://hpo.jax.org/app/browse/term/HP:0003584", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://hpo.jax.org/app/browse/term/HP:0003581" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "A type of adult onset with onset of symptoms after the age of 60 years." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Gruppo d'età tarda" }, { "@language" : "nl", "@value" : "Laat begin" }, { "@language" : "en", "@value" : "Late onset" }, { "@language" : "da", "@value" : "Sen aldersgruppe" } ] }, { "@id" : "https://hpo.jax.org/app/browse/term/HP:0003596", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://hpo.jax.org/app/browse/term/HP:0003581" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "A type of adult onset with onset of symptoms at the age of 40 to 60 years." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "Aldersgruppe i middelalderen" }, { "@language" : "nl", "@value" : "Begin op middelbare leeftijd" }, { "@language" : "it", "@value" : "Gruppo d'età della mezza età" }, { "@language" : "en", "@value" : "Middle age onset" } ] }, { "@id" : "https://hpo.jax.org/app/browse/term/HP:0003674", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "The age group in which disease manifestations appear." }, { "@language" : "en", "@value" : "This class represents a generic age group." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Gruppo d'età" }, { "@language" : "en", "@value" : "Onset" }, { "@language" : "da", "@value" : "aldersgruppe" }, { "@language" : "nl", "@value" : "leeftijdsgroep" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#Annotation" } ] }, { "@id" : "https://hpo.jax.org/app/browse/term/HP:0011462", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://hpo.jax.org/app/browse/term/HP:0003581" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Onset of disease at the age of between 16 and 40 years." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Begin bij jonge volwassenen" }, { "@language" : "it", "@value" : "Gruppo d'età giovane adulto" }, { "@language" : "da", "@value" : "Ung voksen aldersgruppe" }, { "@language" : "en", "@value" : "Young adult onset" } ] }, { "@id" : "https://w3id.org/examode/ontology#", "@type" : [ "http://www.w3.org/2002/07/owl#Ontology" ], "http://purl.org/dc/elements/1.1/title" : [ { "@value" : "The ExaMode Ontology" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The ExaMode Ontology, version 0.2, based from assumptions inferred from the data in the file DokemDam/material/EXAMODE_datasets/EXAMODE_1stDS_AOEC. It was inferred from the NL text in these files an from information taken around the internet, then validated by the experts of the Cannizzaro Hospital in Catania. This ontology models four types of clinical cases: cervix cancer, lung cancer, colon cancer, celiac disease." } ] }, { "@id" : "https://w3id.org/examode/ontology#Annotation", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A general class to represent all the kionds of annnotations that may be needed in an ExaMode report." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Annotation" }, { "@language" : "it", "@value" : "Annotazione" }, { "@language" : "nl", "@value" : "annotatie" } ] }, { "@id" : "https://w3id.org/examode/ontology#AntrumPyloriBiopsy", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia dell'antro pilorico" }, { "@language" : "nl", "@value" : "Biopsie van het pylorusantrum" }, { "@language" : "en", "@value" : "Biopsy of the pyloric antrum" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15389" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInMateriali" : [ { "@value" : "“Biopsia” + “STOMACO” + “Antro”" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ] }, { "@id" : "https://w3id.org/examode/ontology#AssociatedDisease", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "In this ontologies different entities were developed to deal with specific entities. This property is used to link one entity to the corresponding disease it was defined for. It is just some more information to keep track of the nature of entities and to what disease they originally belong." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Malattia associata" }, { "@language" : "en", "@value" : "associated disease" }, { "@language" : "nl", "@value" : "geassocieerde ziekte" }, { "@language" : "da", "@value" : "tilknyttet sygdom" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://www.ebi.ac.uk/ols/ontologies/doid/Disease" } ] }, { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A set of checks controlled on an Immunohistochemical test that can only have a boolean result (positive - negative)." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Booleaans controle-element" }, { "@language" : "en", "@value" : "Boolean Check Element" }, { "@language" : "it", "@value" : "Elemento di controllo booleano" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#CheckElement" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ] }, { "@id" : "https://w3id.org/examode/ontology#C0908867", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "cytokeratin 34bE12" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CK34BE12" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0908867" } ] }, { "@id" : "https://w3id.org/examode/ontology#C0909069", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "endonuclease P40" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso" : [ { "@id" : "https://uts.nlm.nih.gov//metathesaurus.html?cui=C0909069" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "P40" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0909069" } ] }, { "@id" : "https://w3id.org/examode/ontology#CD3", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C51944" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Cluster of Differentiation 3" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Cluster of Differentiation 3" }, { "@value" : "n immunology, the CD3 (cluster of differentiation 3) T cell co-receptor helps to activate both the cytotoxic T cell (CD8+ naive T cells) and also T helper cells (CD4+ naive T cells). It consists of a protein complex and is composed of four distinct chains. In mammals, the complex contains a CD3γ chain, a CD3δ chain, and two CD3ε chains. These chains associate with the T-cell receptor (TCR) and the ζ-chain (zeta-chain) to generate an activation signal in T lymphocytes. The TCR, ζ-chain, and CD3 molecules together constitute the TCR complex." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "CD3" }, { "@language" : "nl", "@value" : "cluster van differentiatie 3" }, { "@language" : "it", "@value" : "gruppo di differenziazione 3" }, { "@language" : "da", "@value" : "klynge af differentiering 3" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "presence of word \"CD3\"" } ] }, { "@id" : "https://w3id.org/examode/ontology#Cannizzaro_Hospital", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://xmlns.com/foaf/0.1/organization" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Entity representing the Cannizzaro Hospital as producer of medical report" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Cannizzaro Hospital" }, { "@language" : "it", "@value" : "Ospedale Cannizzaro" }, { "@language" : "nl", "@value" : "Ziekenhuis Cannizzaro" }, { "@language" : "da", "@value" : "cannizzaro hospital" } ] }, { "@id" : "https://w3id.org/examode/ontology#CeliacAbnormality", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Class for abnormalities that can be found in a patient looking for the celiac disease. Some of these include the Edema, Hyperemia, Intestinal fibrosis, Brunner's cl==Gland Hyperplasia." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Annotazione riguardo anormalità relativa a celiachia" }, { "@language" : "en", "@value" : "Celiac Abnormality" }, { "@language" : "nl", "@value" : "Coeliakie abnormaliteit" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ] }, { "@id" : "https://w3id.org/examode/ontology#CeliacClinicalCaseReport", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Class representing all the celiac disease clinical cases." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Caso clinico di malattia celiaca" }, { "@language" : "en", "@value" : "Celiac Clinical Case Report" }, { "@language" : "nl", "@value" : "Klinisch geval van coeliakie" }, { "@language" : "da", "@value" : "klinisch geval van coeliakie" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2002/07/owl#disjointWith" : [ { "@id" : "https://w3id.org/examode/ontology#CervixClinicalCaseReport" }, { "@id" : "https://w3id.org/examode/ontology#ColonClinicalCaseReport" }, { "@id" : "https://w3id.org/examode/ontology#LungClinicalCaseReport" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ] }, { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotation", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A subclass containing Annotations only for the celiac disease." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Annotazione riguardo Celiachia" }, { "@language" : "en", "@value" : "Celiac Disease Annotation" }, { "@language" : "nl", "@value" : "Coeliakie Annotatie" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ] }, { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotationBag", "@type" : [ "http://www.w3.org/2002/07/owl#Class", "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This object is defined as a sort of bag. Every instance may have certain triples that talk about the status of the patient. The engine will need to mint a new url (a blank node is good) to create this object." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Annotatiezak voor coeliakie" }, { "@language" : "da", "@value" : "Annotationspose til cøliaki" }, { "@language" : "it", "@value" : "Bag di annotazione per celiachia" }, { "@language" : "en", "@value" : "Celiac Disease Annotation Bag" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "https://w3id.org/examode/ontology#CervixAnnotation", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A class that is intended to be a set for information that may or may not be found in a cervix case. Instances of this class are 'things' that may be found (or not) in a patient with cervix cancer. For example, the Human Papilloma Virus. The HPV is an instance of this class and every time we annotate a case with HPV we use that instance, of type this class, without every time creating a HPV instance." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Annotatie van de baarmoederhals" }, { "@language" : "it", "@value" : "Annotazione riguardo Cervice" }, { "@language" : "en", "@value" : "Cervix Annotation" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ] }, { "@id" : "https://w3id.org/examode/ontology#CervixClinicalCaseReport", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Class representing the clinical cases about cervix cancer." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Caso Clinico di Cancro alla Cervice" }, { "@language" : "en", "@value" : "Cervix Clinical Case Report" }, { "@language" : "nl", "@value" : "Klinisch geval van baarmoederhalskanker" }, { "@language" : "da", "@value" : "casusrapport van darmkanker" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2002/07/owl#disjointWith" : [ { "@id" : "https://w3id.org/examode/ontology#ColonClinicalCaseReport" }, { "@id" : "https://w3id.org/examode/ontology#LungClinicalCaseReport" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ] }, { "@id" : "https://w3id.org/examode/ontology#CheckElement", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This is a set of elements containing all the possible checks that a patient may do for a generic disease." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Check Element" }, { "@language" : "nl", "@value" : "Controleer Element" }, { "@language" : "it", "@value" : "Controllo" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C51944" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ] }, { "@id" : "https://w3id.org/examode/ontology#ColonAnnotation", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A class that is a container for elements that may or may not be found in a colon case. Originally thought to contain the presence of Dysplasia." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Annotazione riguardo Colon" }, { "@language" : "en", "@value" : "Colon Annotation" }, { "@language" : "nl", "@value" : "dubbele punt annotatie" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ] }, { "@id" : "https://w3id.org/examode/ontology#ColonClinicalCaseReport", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@id" : "https://w3id.org/examode/ontology#General" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Class representing all colon cancer cases." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Caso Clinico di Cancro al Colon" }, { "@language" : "en", "@value" : "Colon Clinical Case Report" }, { "@language" : "nl", "@value" : "Klinisch geval van darmkanker" }, { "@language" : "da", "@value" : "casusrapport van darmkanker" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2002/07/owl#disjointWith" : [ { "@id" : "https://w3id.org/examode/ontology#LungClinicalCaseReport" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ] }, { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A container class for elements that may or may not be present in diseases. One disease may present some elements that are not exaclty directly correlated to the presence/absence of the disease. or elements that are just there, and it is useful to note their presence/absence. This is the class of all elements that can be considered a sort of addendum, information extracted from the clinical case record but not directly related to the presence outcome. The inspiration for this class first came when we had to deal with the Annotations to the Case of the Celiac Disease. You can also think of this class as a superclass for other containers." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Annotazione di malattia" }, { "@language" : "en", "@value" : "Disease Annotation" }, { "@language" : "nl", "@value" : "Notatie van een ziekte" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#Annotation" } ] }, { "@id" : "https://w3id.org/examode/ontology#FloatCheckElement", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A set of checks that can be performed on a Immunohistochemical Test that present a float as output value." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Elemento di controllo del galleggiante" }, { "@language" : "en", "@value" : "Float Check Element" }, { "@language" : "nl", "@value" : "Float Check-element" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#CheckElement" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ] }, { "@id" : "https://w3id.org/examode/ontology#General", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#SemantcArea" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "In this ontology there are different semantic areas. These are: diagnosis, procedure, test, anatomical location, and general.\nGeneral is the area of entities that are common to all clinical cases. Organization, clinical case reports, diseases, are classes with entities that do not belong to the other 4 semantic areas, therefore we classified them in general. These are the classes that, in our documentation, are contained in the green box." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Algemene entiteit" }, { "@language" : "it", "@value" : "Entità Generica" }, { "@language" : "en", "@value" : "General Entity" }, { "@language" : "da", "@value" : "generieke entiteit" } ] }, { "@id" : "https://w3id.org/examode/ontology#GreaterCurvatureBiopsy", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Biopsia della grande curvatura" }, { "@language" : "nl", "@value" : "Biopsie van de grotere kromming" }, { "@language" : "en", "@value" : "Biopsy of the Greater Curvature" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15389" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInMateriali" : [ { "@language" : "it", "@value" : "Biopsia + Stomaco + Corpo" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Procedure" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/Intervention" } ] }, { "@id" : "https://w3id.org/examode/ontology#InconclusiveOutcome", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Inconclusive Outcome. Not enough tissue or not enough evidence was present to decide for a negative or positive outcome." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Inconclusive Outcome" }, { "@language" : "nl", "@value" : "Onduidelijk resultaat" }, { "@language" : "it", "@value" : "Risultato inconcludente" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "https://w3id.org/examode/ontology#InsufficientMaterial", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Inconclusive outcome where not enough material was present for the diagnosis." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Insufficient Material" }, { "@language" : "it", "@value" : "Materiale insufficiente" }, { "@language" : "nl", "@value" : "Onvoldoende materiaal" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#InconclusiveOutcome" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M010100" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0332630" } ] }, { "@id" : "https://w3id.org/examode/ontology#InterventionHasLocation", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "every intervention/procedure is performed in a location. We use the topology entities to codify the information about this location. We use this property supposing to reference one subclass of Topography. We need to check that it is possible to use as range the whole class topography or if we need to go to a superclass." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C25218" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "interventie heeft topografie" }, { "@language" : "en", "@value" : "intervention has topography" }, { "@language" : "da", "@value" : "leasing af interventionen" }, { "@language" : "it", "@value" : "locazione intervento" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C38034" } ] }, { "@id" : "https://w3id.org/examode/ontology#LungAnnotation", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This class, as the others, is used to instantiate annotations over clinical cases." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Annotazione riguardo Polmone" }, { "@language" : "nl", "@value" : "Longannotatie" }, { "@language" : "en", "@value" : "Lung Annotation" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ] }, { "@id" : "https://w3id.org/examode/ontology#LungClinicalCaseReport", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Class representing all lung cancer cases." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Caso clinico di cancro ai polmoni" }, { "@language" : "nl", "@value" : "Klinisch geval van longkanker" }, { "@language" : "en", "@value" : "Lung Clinical Case Report" }, { "@language" : "da", "@value" : "klinisch geval van longkanker" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ] }, { "@id" : "https://w3id.org/examode/ontology#NegativeResult", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "The presence of a negative result, i.e. normal tissue" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Negatief resultaat" }, { "@language" : "en", "@value" : "Negative Result" }, { "@language" : "it", "@value" : "Risultato negativo" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@language" : "en", "@value" : "M00100" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "https://w3id.org/examode/ontology#NoMalignancy", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "No Evidence of Malignancy" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Geen maligniteit" }, { "@language" : "it", "@value" : "Nessuna malignità" }, { "@language" : "en", "@value" : "No Malignancy" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M09450" } ] }, { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Positive Outcome, i.e., something has been found in the patient. This is the higher class for the positive outcome." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Positieve uitkomst" }, { "@language" : "en", "@value" : "Positive Outcome" }, { "@language" : "it", "@value" : "Risultato positivo" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "https://w3id.org/examode/ontology#PositiveToCeliacDisease", "@type" : [ "http://www.w3.org/2002/07/owl#Class", "http://www.w3.org/2002/07/owl#NamedIndividual" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Represents the fact that the patient is actually positive to celiac disease" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Positivo alla celiachia" }, { "@language" : "da", "@value" : "positief voor coeliakie" }, { "@language" : "nl", "@value" : "positief voor coeliakie" }, { "@language" : "en", "@value" : "positive to celiac disease" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ] }, { "@id" : "https://w3id.org/examode/ontology#Procedure", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#SemantcArea" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Semantic class to describe the semantic area of the interventions. We defined our own class (and not used the ncit one) because we wanted to keep the two separated to not entangle too much queries and also because here we are using it with a slightly different semantic meaning." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Procedura" }, { "@language" : "en", "@value" : "Procedure" }, { "@language" : "nl", "@value" : "procedure" } ], "https://w3id.org/examode/ontology#hasSynonymLabel" : [ { "@value" : "Intervention" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C8364" } ] }, { "@id" : "https://w3id.org/examode/ontology#SemantcArea", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A general container for entities that represent semantical areas. Examples of semantical areas include \"general\" (common to all diseases), \"Anatomic Site\", \"Procedure\", \"Diagnosis\"." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Area Semantica" }, { "@language" : "en", "@value" : "Semantic Area" }, { "@language" : "nl", "@value" : "semantisch gebied" }, { "@language" : "da", "@value" : "semantisk område" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#Annotation" } ] }, { "@id" : "https://w3id.org/examode/ontology#SevereColonDysplasia", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#ColonAnnotation" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Severe Colon Dysplasia; Severe dysplasia of colon" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Ernstige colondysplasie" }, { "@language" : "it", "@value" : "Grave Displasia del Colon" }, { "@language" : "en", "@value" : "Severe Colon Dysplasia" }, { "@language" : "da", "@value" : "alvorlig kolon dysplasi" } ], "http://www.w3.org/2004/02/skos/core#broader" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C8364" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002032" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0586369" } ], "https://w3id.org/examode/ontology#isSpecificationOf" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C4847" } ] }, { "@id" : "https://w3id.org/examode/ontology#SpecimenUnsatisfactory", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Campione insoddisfacente per la diagnosi" }, { "@language" : "nl", "@value" : "Specimen onbevredigend voor diagnose" }, { "@language" : "en", "@value" : "Specimen unsatisfactory for diagnosis" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#InconclusiveOutcome" } ], "https://w3id.org/examode/ontology#hasSNOMEDCode" : [ { "@value" : "M090000" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C15220" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0702119" } ] }, { "@id" : "https://w3id.org/examode/ontology#Test", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "https://w3id.org/examode/ontology#SemantcArea" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Test is a semantic area encompassing all those entities representing one test. One example are the immunistochemical tests like the immunoprecipitation. These tests may have different outcome, like being true or false, or a non-negative integer." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Test" }, { "@language" : "da", "@value" : "prøve" }, { "@language" : "it", "@value" : "test" }, { "@language" : "nl", "@value" : "test" } ], "https://w3id.org/examode/ontology#hasSynonymLabel" : [ { "@value" : "Test (Semantic Area)" } ] }, { "@id" : "https://w3id.org/examode/ontology#annotatedRule", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This property is used to annotated classes with a comment representing the rule that we inferred during the process of definition of this ontology. This rule may be impkemented to extract entities from a clinical case record. NB: we do not guarantee that these rules are always valid, or that they are the only valid. It may be the case that they are inaccurate since we were only able to infer them from the cases that were provided to us. Treat these annotations only as a documentation of our process and for a first implementation of the entities extractor." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "annotated rule" }, { "@language" : "nl", "@value" : "annotatieregel" }, { "@language" : "da", "@value" : "regel for annotering" }, { "@language" : "it", "@value" : "regola per l'annotazione" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "property to take notes (for reminding us/ help us define rule/ maybe do some reasoning in the future) about which keywords to look for in the Diagnosis" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "associated keyword in diagnosis" }, { "@language" : "nl", "@value" : "bijbehorende trefwoorden in de diagnose" }, { "@language" : "da", "@value" : "nøgleord, der er knyttet til diagnosen" }, { "@language" : "it", "@value" : "parole chiave associate nella diagnosi" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#associatedKeywordInMateriali", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Connects one class (a location or a intervention) to the keyword in the field Materiali that, if found, indicates the presence of that class." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "associated keyword in Materials" }, { "@language" : "nl", "@value" : "bijbehorende trefwoorden in het veld Materialen" }, { "@language" : "it", "@value" : "parole chiave associate nel field Materiali" }, { "@language" : "da", "@value" : "tilknyttede nøgleord i feltet Materialer" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#checkOutcome", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Connects one annotation to its boolean value." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "outcome" }, { "@language" : "it", "@value" : "presenta outcome" }, { "@language" : "nl", "@value" : "presenteert resultaten" }, { "@language" : "da", "@value" : "udfald" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#boolean" } ] }, { "@id" : "https://w3id.org/examode/ontology#definition", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Property representiong the definition in the ontobee website. In later versions of the ontology we prefer rdfs:comment since it is more universally used." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Definitie" }, { "@language" : "da", "@value" : "Definition" }, { "@language" : "en", "@value" : "Definition" }, { "@language" : "it", "@value" : "Definizione" } ] }, { "@id" : "https://w3id.org/examode/ontology#detectedHumanPapillomaVirus", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "If this property is present, it signals the presence of a human papilloma virus in the outcome." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "detected human papilloma virus" }, { "@language" : "nl", "@value" : "gedetecteerd humaan papillomavirus" }, { "@language" : "it", "@value" : "identificato HPV" }, { "@language" : "da", "@value" : "påvist human papillomavirus" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ], "http://www.w3.org/2002/07/owl#maxCardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "1" } ], "http://www.w3.org/2002/07/owl#minCardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "0" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasAge", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Connects the Report to the age of the patient." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/IDOMAL_0000603" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "età" }, { "@language" : "da", "@value" : "har alder" }, { "@language" : "en", "@value" : "has age" }, { "@language" : "nl", "@value" : "heeft leeftijd" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#integer" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasAgeOnset", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Links one record to its age group, or 'onset'." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/IDOMAL_0000603" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha gruppo d'età" }, { "@language" : "da", "@value" : "har aldersgruppe" }, { "@language" : "en", "@value" : "has age onset" }, { "@language" : "nl", "@value" : "heeft leeftijdsgroep" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://hpo.jax.org/app/browse/term/HP:0003674" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasBlockNumber", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "The block number identifies the part of the image connected to the diagnosis (for Radbound). For AOC this property is not necessary. We use it to contain the \"internal id\"." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha numero di blocco" }, { "@language" : "it", "@value" : "has block number" }, { "@language" : "da", "@value" : "heeft bloknummer" }, { "@language" : "nl", "@value" : "heeft bloknummer" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#int" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasCeliacAnnotation", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "has celiac annotation" }, { "@language" : "nl", "@value" : "heeft coeliakie-annotatie" }, { "@language" : "it", "@value" : "presenta annotazione riguardo malattia celiaca" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotationBag" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasClinicalCaseReport", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Coonects one patient to its clinical case report." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/IDOMAL_0000603" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha Caso Clinico" }, { "@language" : "en", "@value" : "has Clinical Case Report" }, { "@language" : "nl", "@value" : "heeft een klinische casus" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasDiagnosisText", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "nl", "@value" : "Connects an instance of clinical case to its diagnosis, i.e. the text written by the doctor." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "har diagnosefelt" }, { "@language" : "en", "@value" : "has textual diagnosis" }, { "@language" : "it", "@value" : "presenta campo diagnosi" }, { "@language" : "nl", "@value" : "presenteert diagnoseveld" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasDysplasia", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This property connects an instance of outcome for a case of Colon cancer to a presence of Dysplasia (if it is present). Cardinality between 0 and 1." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#PositiveOutcome" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "has dysplasia" }, { "@language" : "nl", "@value" : "heeft dysplasie" }, { "@language" : "it", "@value" : "presenta displasia" }, { "@language" : "da", "@value" : "præsenterer dysplasi" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#ColonAnnotation" } ], "http://www.w3.org/2002/07/owl#maxCardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "1" } ], "http://www.w3.org/2002/07/owl#minCardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "0" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasGender", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "To connect a record with the gender of the corresponding person." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/IDOMAL_0000603" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "har køn" }, { "@language" : "en", "@value" : "has gender" }, { "@language" : "nl", "@value" : "heeft geslacht" }, { "@language" : "it", "@value" : "presenta genere" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C17357" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasIEL", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Connects an annotation about a celiac disease to the corresponding intraepithelial lympochyte amount." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotationBag" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "has IEL" }, { "@language" : "it", "@value" : "presenta IEL" }, { "@language" : "nl", "@value" : "presenteert IEL" }, { "@language" : "da", "@value" : "præsenterer IEL" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/OBA_0004525" } ], "http://www.w3.org/2002/07/owl#cardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "1" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasImage", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Connects a clinical case report to the name of its corresponding image." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "has image" }, { "@language" : "da", "@value" : "heeft een afbeelding" }, { "@language" : "nl", "@value" : "huidige afbeelding" }, { "@language" : "it", "@value" : "presenta immagine" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasIntervention", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "A report is associated to an intervention (or procedure) that was performed to the patient to obtain the tissue used to study the presence (or absence) of the disease." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Has Intervention" }, { "@language" : "nl", "@value" : "Heeft interventie" }, { "@language" : "it", "@value" : "intervento associato" }, { "@language" : "da", "@value" : "tilknyttet intervention" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C25218" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasLocation", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "A clinical case record has a location where it is positioned. This property connects an instance of clinical case report (of whatever type) to a location, a member of the class topology. NB: since we are connecting a report to a location, we asked ourselves if a Topography location can be considered member of itself. For now, we are saying yes, that a subclass of topography is itself a topography, and can be directly referenced by this property." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "har placering" }, { "@language" : "en", "@value" : "has location" }, { "@language" : "nl", "@value" : "heeft locatie" }, { "@language" : "it", "@value" : "presenta posizione" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C38034" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasOntobeeAnnotation", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A property to connect one entity to the annotations found for that entitiy in the corresponding page in Ontobee (http://www.ontobee.org/)." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha annotazione da Ontobee" }, { "@language" : "da", "@value" : "har rekord fra ontobee" }, { "@language" : "en", "@value" : "has ontobee annotation" }, { "@language" : "nl", "@value" : "heeft een record van Ontobee" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasOutcome", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Every report has an outcome, whatever it may be (positive, negative, inconclusive etc.)" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "har resultatet" }, { "@language" : "en", "@value" : "has outcome" }, { "@language" : "nl", "@value" : "heeft uitkomst" }, { "@language" : "it", "@value" : "presenta risultato" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasSNOMEDCode", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Use this property to annotate one entity with its corresponding SNOMED code." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha codice SNOMED" }, { "@language" : "da", "@value" : "har SNOMED-kode" }, { "@language" : "en", "@value" : "has SNOMED code" }, { "@language" : "nl", "@value" : "heeft SNOMED-code" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasSemanticArea", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Connects one ontology class or Individual to the semantic area to which it belongs. For example, a Poly is a diagnosis, therefore the Polyp belongs to the semantic area of Diagnosis." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "har semantisk område" }, { "@language" : "en", "@value" : "has Semantic Area" }, { "@language" : "it", "@value" : "presenta area semantica" }, { "@language" : "nl", "@value" : "presenteert semantisch gebied" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://www.examode.dei.unipd.it/ontology/AreaAnnotation" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasSynonymLabel", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "Use this property when you want to add a synonim label, based on information contained in Ontobee. You should not use this property when you want to add synonims that are going to be used in some algorithm or methodlogy. You should use hasSynonim for that." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha label sinonimo" }, { "@language" : "da", "@value" : "har synonym etiket" }, { "@language" : "en", "@value" : "has synonym label" }, { "@language" : "nl", "@value" : "heeft een synoniem label" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasTest", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "connects an instance of intervention to some trait found in the patient of the class Check Lung." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "har test" }, { "@language" : "en", "@value" : "has test" }, { "@language" : "it", "@value" : "presenta test" }, { "@language" : "nl", "@value" : "presenteert een test" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C47891" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasUMLS", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This property connects an element to its UMLS code " } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "ha codice UMLS" }, { "@language" : "da", "@value" : "har UMLS-kode" }, { "@language" : "en", "@value" : "has UMLS code" }, { "@language" : "nl", "@value" : "heeft UMLS-code" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" }, { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasValue", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Connects a test annotation to its float value" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#FloatCheckElement" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "har værdi" }, { "@language" : "en", "@value" : "has value" }, { "@language" : "it", "@value" : "presenta valore" }, { "@language" : "nl", "@value" : "presenta valore" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#float" } ], "http://www.w3.org/2002/07/owl#cardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "1" } ] }, { "@id" : "https://w3id.org/examode/ontology#hasVillusCryptRatio", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "en", "@value" : "Connects one annotation about a celiac disease case to its villi to Crypt of Lieberkuhn ratio value." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotationBag" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "has villi to crypt ratio" }, { "@language" : "nl", "@value" : "heeft een verhouding tussen villi en crypt" }, { "@language" : "it", "@value" : "presenta rapporto villi/cripte" }, { "@language" : "da", "@value" : "viser villi / krypts-forhold" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#villusCryptRatio" } ] }, { "@id" : "https://w3id.org/examode/ontology#isAboutDisease", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This property is used to connect an instance of a clinical case to an instance of Disease. We want to note here, since we found ourselves thinking about this, that one disease, e.g. colon cancer, is itself a subclass of Disease, but also an instance of Disease (there may be many different types of colon cancer, but also colon cancer is a disease by itself). Thus, this property has as a range the disease and you should expect, every time you have a report, to have this property pointing to one of the four instances of disease. In the future this decision may change." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Connessa alla malattia" }, { "@language" : "da", "@value" : "gaat over ziekte" }, { "@language" : "nl", "@value" : "handler om sygdom" }, { "@language" : "en", "@value" : "is about disease" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://www.ebi.ac.uk/ols/ontologies/doid/Disease" } ], "http://www.w3.org/2002/07/owl#cardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "1" } ] }, { "@id" : "https://w3id.org/examode/ontology#isSpecificationOf", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty", "http://www.w3.org/2002/07/owl#TransitiveProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "We may have certain hyerarchies that are not exactly in a relation of type subClassOf or partOf. These are usually determined by specification of more general concepts. We use this property to express such hyerarchies. One example (the only one for now in ExaMode) is the one of the Dysplasia." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#Annotation" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "er specifik for" }, { "@language" : "nl", "@value" : "is specificatie van" }, { "@language" : "en", "@value" : "is specification of" }, { "@language" : "it", "@value" : "è specifica di" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#Annotation" } ] }, { "@id" : "https://w3id.org/examode/ontology#presenceOf", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This property is used to connect an outcome instance to a generic annotation which signals the presence of some more information correlating the clinical case and which may not be directly pertinent to the disease but however still linked to it." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C20200" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "aanwezigheid van" }, { "@language" : "it", "@value" : "individuata presenza di" }, { "@language" : "en", "@value" : "presence of" }, { "@language" : "da", "@value" : "tilstedeværelse af" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#DiseaseAnnotation" } ] }, { "@id" : "https://w3id.org/examode/ontology#presenceOfCeliacAbnormality", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "aanwezigheid van coeliakie-anomalie" }, { "@language" : "en", "@value" : "presence of celiac abnormality" }, { "@language" : "it", "@value" : "presenza di anomalia celiaca" }, { "@language" : "da", "@value" : "tilstedeværelse af cøliaki anomali" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacAbnormality" } ] }, { "@id" : "https://w3id.org/examode/ontology#presenceOfCeliacElement", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "This property connects a celiac disease clinical case to annotations that may or may not be found in the patient." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "aanwezigheid van coeliakie-element" }, { "@language" : "en", "@value" : "presence of celiac element" }, { "@language" : "it", "@value" : "presenza di elemento celiaco" }, { "@language" : "da", "@value" : "tilstedeværelse af cøliaki element" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotation" } ], "http://www.w3.org/2002/07/owl#maxCardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "1" } ], "http://www.w3.org/2002/07/owl#minCardinality" : [ { "@type" : "http://www.w3.org/2001/XMLSchema#nonNegativeInteger", "@value" : "0" } ] }, { "@id" : "https://w3id.org/examode/ontology#taxonNotes", "@type" : [ "http://www.w3.org/2002/07/owl#AnnotationProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "A field found sometimes for entities taken from Ontobee's ontologies. You can treat it as an ulterior/alternative definition." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://www.w3.org/2002/07/owl#Thing" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Note tassonimiche" }, { "@language" : "nl", "@value" : "Structurele opmerkingen" }, { "@language" : "da", "@value" : "taksonomiske noter" }, { "@language" : "en", "@value" : "taxon notes" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ], "http://www.w3.org/2000/01/rdf-schema#subPropertyOf" : [ { "@id" : "https://w3id.org/examode/ontology#definition" } ] }, { "@id" : "https://w3id.org/examode/ontology#testUsed", "@type" : [ "http://www.w3.org/2002/07/owl#ObjectProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "the test being used in this report" } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "http://purl.org.spar/fabio/ClinicalCaseReport" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "da", "@value" : "test brugt" }, { "@language" : "nl", "@value" : "test gebruikt" }, { "@language" : "en", "@value" : "test used" }, { "@language" : "it", "@value" : "test utilizzato" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C47891" } ] }, { "@id" : "https://w3id.org/examode/ontology#uterusNOS", "@type" : [ "http://www.w3.org/2002/07/owl#NamedIndividual", "http://purl.obolibrary.org/obo/NCIT_C38034" ], "http://purl.obolibrary.org/obo/UBPROP_0000001" : [ { "@value" : "he hollow muscular organ in female mammals in which the blastocyst normally becomes embedded and in which the developing embryo and fetus is nourished. Its cavity opens into the vagina below and into a uterine tube on either side." } ], "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym" : [ { "@value" : "Uterus" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "The female muscular organ of gestation in which the developing embryo or fetus is nourished until birth." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "baarmoeder, niet anders gespecificeerd" }, { "@language" : "it", "@value" : "utero, non altrimenti specificato" }, { "@language" : "en", "@value" : "uterus, NOS" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0002974" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "http://purl.obolibrary.org/obo/NCIT_C13717" } ], "https://w3id.org/examode/ontology#taxonNotes" : [ { "@value" : "Most animals that lay eggs, such as birds and reptiles, have an oviduct instead of a uterus. In monotremes, mammals which lay eggs and include the platypus, either the term uterus or oviduct is used to describe the same organ, but the egg does not develop a placenta within the mother and thus does not receive further nourishment after formation and fertilization. Marsupials have two uteruses, each of which connect to a lateral vagina and which both use a third, middle 'vagina' which functions as the birth canal. Marsupial embryos form a choriovitelline 'placenta' (which can be thought of as something between a monotreme egg and a 'true' placenta), in which the egg's yolk sac supplies a large part of the embryo's nutrition but also attaches to the uterine wall and takes nutrients from the mother's bloodstream." } ] }, { "@id" : "https://w3id.org/examode/ontology#villiStatus", "@type" : [ "http://www.w3.org/2002/07/owl#DatatypeProperty" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "connects one bag of annotations for the celiac disease to the length of the villi." } ], "http://www.w3.org/2000/01/rdf-schema#domain" : [ { "@id" : "https://w3id.org/examode/ontology#CeliacDiseaseAnnotationBag" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Staat van intestinale villi" }, { "@language" : "it", "@value" : "Stato dei villi intestinali" }, { "@language" : "en", "@value" : "villi status" } ], "http://www.w3.org/2000/01/rdf-schema#range" : [ { "@id" : "http://purl.obolibrary.org/obo/VT_0010209" } ] }, { "@id" : "https://w3id.org/examode/ontology#villusCryptRatio", "@type" : [ "http://www.w3.org/2000/01/rdf-schema#Datatype" ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@language" : "da", "@value" : "Lieberkuhn villi / krypts-forhold" }, { "@language" : "it", "@value" : "Rapporto villi / cripte di Lieberkhun" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Villi to crypt of Lieberkuhn Ratio" }, { "@language" : "nl", "@value" : "Villi tot crypte van Lieberkuhn Ratio" } ], "http://www.w3.org/2002/07/owl#equivalentClass" : [ { "@id" : "http://www.w3.org/2001/XMLSchema#string" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0005130" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "check the presence of keywords “Rapporto villo cripta”" } ] }, { "@id" : "https://www.ebi.ac.uk/ols/ontologies/doid/Disease", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.obolibrary.org/obo/NCIT_P106" : [ { "@id" : "https://w3id.org/examode/ontology#General" }, { "@id" : "https://www.examode.dei.unipd.it/ontology/General" } ], "http://www.w3.org/2000/01/rdf-schema#comment" : [ { "@value" : "General class representing one disease." } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Disease" }, { "@language" : "it", "@value" : "Malattia" }, { "@language" : "da", "@value" : "sygdom" }, { "@language" : "nl", "@value" : "ziekte" } ] }, { "@id" : "https://www.uniprot.org/uniprot/O96009", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Napsin A" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "Napsina" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "May be involved in processing of pneumocyte surfactant precursors." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1538038" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P07988", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Proteina associata ai tensioattivi polmonari B" }, { "@language" : "nl", "@value" : "Pulmonale surfactant-geassocieerd proteïne B." }, { "@language" : "en", "@value" : "Pulmonary surfactant-associated protein B" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Pulmonary surfactant-associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-B increases the collapse pressure of palmitic acid to nearly 70 millinewtons per meter." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0072599" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P08247", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://purl.org/dc/elements/1.1/title" : [ { "@value" : "Synaptophysin" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "nl", "@value" : "Synaptofysin" }, { "@language" : "en", "@value" : "Synaptophysin" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "Sinaptofisina" }, { "@value" : "Syph Human" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Possibly involved in structural functions as organizing other membrane components or in targeting the vesicles to the plasma membrane. Involved in the regulation of short-term and long-term synaptic plasticity." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0085255" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P08473", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Neprilysin" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CD10" }, { "@value" : "Neprilysin" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Thermolysin-like specificity, but is almost confined on acting on polypeptides of up to 30 amino acids (PubMed:15283675, PubMed:8168535). Biologically important in the destruction of opioid peptides such as Met- and Leu-enkephalins by cleavage of a Gly-Phe bond (PubMed:17101991). Able to cleave angiotensin-1, angiotensin-2 and angiotensin 1-9 (PubMed:15283675). Involved in the degradation of atrial natriuretic factor (ANF) (PubMed:2531377, PubMed:2972276). Displays UV-inducible elastase activity toward skin preelastic and elastic fibers (PubMed:20876573)." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0025250" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P08575", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Fosfatasi tirosina-proteina tipo recettore C" }, { "@language" : "nl", "@value" : "Receptor-type tyrosine-eiwitfosfatase C." }, { "@language" : "en", "@value" : "Receptor-type tyrosine-protein phosphatase C" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CD45" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Protein tyrosine-protein phosphatase required for T-cell activation through the antigen receptor. Acts as a positive regulator of T-cell coactivation upon binding to DPP4. The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one. Upon T-cell activation, recruits and dephosphorylates SKAP1 and FYN. Dephosphorylates LYN, and thereby modulates LYN activity (By similarity).\n(Microbial infection) Acts as a receptor for human cytomegalovirus protein UL11 and mediates binding of UL11 to T-cells, leading to reduced induction of tyrosine phosphorylation of multiple signaling proteins upon T-cell receptor stimulation and impaired T-cell proliferation." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0054961" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P08670", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Vimentin" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Vimentins are class-III intermediate filaments found in various non-epithelial cells, especially mesenchymal cells. Vimentin is attached to the nucleus, endoplasmic reticulum, and mitochondria, either laterally or terminally.\nInvolved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0042666" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P08727", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Keratin, type I cytoskeletal 19" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CK19" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Involved in the organization of myofibers. Together with KRT8, helps to link the contractile apparatus to dystrophin at the costameres of striated muscle." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C4082253" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P08729", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Keratin, type II cytoskeletal 7" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CK7" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Blocks interferon-dependent interphase and stimulates DNA synthesis in cells. Involved in the translational regulation of the human papillomavirus type 16 E7 mRNA (HPV16 E7)." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C3272783" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P10645", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Chromogranin-A" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@language" : "it", "@value" : "Chromogranina" } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C0055633" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P26371", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Keratin-associated protein 5-9" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CK5" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated protein (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1956465" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P35900", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Keratin, type I cytoskeletal 20" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "CK20" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Plays a significant role in maintaining keratin filament organization in intestinal epithelia. When phosphorylated, plays a role in the secretion of mucin in the small intestine." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1433368" } ] }, { "@id" : "https://www.uniprot.org/uniprot/P46013", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "it", "@value" : "Marcatore di proliferazione della proteina Ki-67" }, { "@language" : "nl", "@value" : "Proliferatie marker proteïne Ki-67" }, { "@language" : "en", "@value" : "Proliferation marker protein Ki-67" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#FloatCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "Ki-67" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Required to maintain individual mitotic chromosomes dispersed in the cytoplasm following nuclear envelope disassembly (PubMed:27362226). Associates with the surface of the mitotic chromosome, the perichromosomal layer, and covers a substantial fraction of the chromosome surface (PubMed:27362226). Prevents chromosomes from collapsing into a single chromatin mass by forming a steric and electrostatic charge barrier: the protein has a high net electrical charge and acts as a surfactant, dispersing chromosomes and enabling independent chromosome motility (PubMed:27362226). Binds DNA, with a preference for supercoiled DNA and AT-rich DNA (PubMed:10878551). Does not contribute to the internal structure of mitotic chromosomes (By similarity). May play a role in chromatin organization (PubMed:24867636). It is however unclear whether it plays a direct role in chromatin organization or whether it is an indirect consequence of its function in maintaining mitotic chromosomes dispersed (Probable)." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C4742498" } ] }, { "@id" : "https://www.uniprot.org/uniprot/Q14574", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "Desmocollin-3" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion. May contribute to epidermal cell positioning (stratification) by mediating differential adhesiveness between cells that express different isoforms." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1448860" } ] }, { "@id" : "https://www.uniprot.org/uniprot/Q15361", "@type" : [ "http://www.w3.org/2002/07/owl#Class" ], "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym" : [ { "@value" : "Transcription termination factor 1" } ], "http://www.w3.org/2000/01/rdf-schema#label" : [ { "@language" : "en", "@value" : "TTF1 Human" } ], "http://www.w3.org/2000/01/rdf-schema#subClassOf" : [ { "@id" : "https://w3id.org/examode/ontology#BooleanCheckElement" } ], "https://w3id.org/examode/ontology#AssociatedDisease" : [ { "@id" : "http://purl.obolibrary.org/obo/MONDO_0008903" } ], "https://w3id.org/examode/ontology#associatedKeywordInDiagnosis" : [ { "@value" : "Transcription termination factor 1" } ], "https://w3id.org/examode/ontology#definition" : [ { "@value" : "Multifunctional nucleolar protein that terminates ribosomal gene transcription, mediates replication fork arrest and regulates RNA polymerase I transcription on chromatin. Plays a dual role in rDNA regulation, being involved in both activation and silencing of rDNA transcription. Interaction with BAZ2A/TIP5 recovers DNA-binding activity." } ], "https://w3id.org/examode/ontology#hasSemanticArea" : [ { "@id" : "https://w3id.org/examode/ontology#Test" } ], "https://w3id.org/examode/ontology#hasUMLS" : [ { "@id" : "http://linkedlifedata.com/resource/umls/id/C1610981" } ] } ]